BAC Information

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BAC

Clone NameMSMg01-276C15
Chromosome9 (Build37)
Map Location 108,377,489 - 108,377,822
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71
Downstream geneLamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276C15.T7 (MSMg01no276_c15.b1)MSMg01-276C15.TJ (MSMg01no276_c15.g1)
ACCAG414424AG414425
length733734
length of high quality
(start - end)		334 (385 - 718)300 (435 - 734)
definitionCHROMAT_FILE: MSMg01no276_c15.b1 PHD_FILE: MSMg01no276_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:03 2005CHROMAT_FILE: MSMg01no276_c15.g1 PHD_FILE: MSMg01no276_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGGACAGCCCGAGTTATACAGAGAAACCCTGTCTCGAAAAAACA
AAAAGAAAACAAAACAAATTTCACCCAACAAGAATGGCCTTGAGTGAGCC
AGTGTGGGGCTACCTGCCTGCAATCCCAGGTCTTGGGAGGTGAATTTAGG
AAAATTAGCTCAAGGAGAGCTTCAGCTACATAGCAATTTCAAGGCCATCT
GAGTGAAAGACATCTCTCTCAGAATAAAATGAAACAACTTTAAAAAGCCA
GGTATGGCATATGCCTATCGTCTCAGTACTCCAGAAGCCTCTGAGGGAAG
GTCGCTGTGAGTTTTTTGACAGCCTGCGCTACACAAGTACTAACCCAGTT
AGTGCTAGATGTCAAAATCCAACATCAAAAGACAAAGAAAAGACTGAAAA
GCTAACAGCACACACGCAGGGTCCTGTTTAAGTGTGTGCGGGCACACCAG
CCCAACCTGTTTAGGATTCACATGGGCACTGGCATCTTGCCTGACAGGCC
AGGCTGTATTTCAGAGCAGCCCTTGGGCAGGATGCACAAGGCTCAGAGGT
TCTTTTGTTTGTTTTGTTCGTGTTTTGTTTTTTCAAATGTATATAGCCCT
GGGTATCCTGAAAAACACTCTGTAGACCAAGCTGGTCTCAAACTCAGAGA
TCTGCCTGCCTTTGCCTCCCGAGTGCTGGGGTT

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATAAGGAGACTTGGTGAAGACAG
TCTCTTTCCAGAGGTCGGGGGTCAGGTAGCTGTAAGTCTTGGAGATGGCA
TCAAAGGTGACCTTAGCAAAGTTGCCCAGGGTGGCAGCGCAGCCTCTGGC
TGAAGTGTAGCAGTCATCTATACCGGCCATCATCAGGAGCTTCTTGGGCA
CAGGAGCAGAGACAATGCCAGTGCCTGTGGGGGCAGGGATGAGACGCACC
AGCACAGAGCCACAGCGGCCTGTCACATTGCATGGAACAGTGTGGGGCTT
GCCAATCTTGTTCTCCTTTTACCCCCTCCTCATAGGGACAATGGAAAGCT
TGGCCAAGATGATGGCCCCTCGGATGAAAATGAAAACCTCCTTGGAGCAC
TTAACACCAAGACCAACGTGACCGTTGTGTCCCCAATAGTGACGAAAGCC
TTGAACCTGGTCCGCTGGCCAGCCTGAGTCTGCTTCTGCACTGGCATGAT
TTTCAGAACCTCATCCTTTAGGGACGCACCCAGGAAGAAGTCAATGATCT
CAGACTCCTTAATAGGCAGGGAGAACAGGTAGATCTCCTCCAAGGACTTG
ATCTTCATGTCCTTAACCAGGTGGCCCAGCTTGGTGACAGGGATCCACTC
CTTGTCTTCAGCTTTACCTCCACGAGCCCCGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_c15.b1 MSMg01no276_c15.b1 CHROMAT_FILE:
MSMg01no276_c15.b1 PHD_FILE: MSMg01no276_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:03 2005
         (334 letters)



>mm_chr9_108377385_108378118
          Length = 734

 Score =  638 bits (330), Expect = 0.0
 Identities = 333/334 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtactaacccagttagtgctagatgtcaaaatccaacatcaaaagacaaagaaaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aagtactaacccagttagtgctagatgtcaaaatccaacatcaaaagacaaagaaaagac 379

                                                                       
Query: 61  tgaaaagctaacagcacacacgcagggtcctgtttaagtgtgtgcgggcacaccagccca 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 378 tgaaaagctaacagcacacacgcagggtcctgtttaagtgtgtgcgcgcacaccagccca 319

                                                                       
Query: 121 acctgtttaggattcacatgggcactggcatcttgcctgacaggccaggctgtatttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acctgtttaggattcacatgggcactggcatcttgcctgacaggccaggctgtatttcag 259

                                                                       
Query: 181 agcagcccttgggcaggatgcacaaggctcagaggttcttttgtttgttttgttcgtgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agcagcccttgggcaggatgcacaaggctcagaggttcttttgtttgttttgttcgtgtt 199

                                                                       
Query: 241 ttgttttttcaaatgtatatagccctgggtatcctgaaaaacactctgtagaccaagctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttgttttttcaaatgtatatagccctgggtatcctgaaaaacactctgtagaccaagctg 139

                                             
Query: 301 gtctcaaactcagagatctgcctgcctttgcctc 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 138 gtctcaaactcagagatctgcctgcctttgcctc 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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