BAC Information

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BAC

Clone NameMSMg01-276M03
Chromosome9 (Build37)
Map Location 75,647,862 - 75,648,137
singlet/doubletsinglet
Overlap geneBmp5
Upstream geneOnecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107
Downstream geneEG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276M03.T7 (MSMg01no276_m03.b1)MSMg01-276M03.TJ (MSMg01no276_m03.g1)
ACCAG414852AG414853
length687728
length of high quality
(start - end)
242 (50 - 291)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no276_m03.b1 PHD_FILE: MSMg01no276_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:45 2005CHROMAT_FILE: MSMg01no276_m03.g1 PHD_FILE: MSMg01no276_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACATTCGGAGCGGATCCGCGGAATTCACCAATTGCTACAAAGATT
ATATTAGTCTGTGTCTTGAAGTACGCTTTGGATAAGATCGTGTACCCCAA
GATTTGGTACATATATGTTTAACATTGTGATGTCATCTTAGACCACTTTT
CCTTTATCAGCATGAAATGCTCTTCTTTATCACTTCAGATTAATTTTACT
AAGTCCATTTTGTCAGTTATTAGGATAGTGATGCCTGATGTCTCCTGTTC
CTATCTGCTTGGAATAGTTTTTCAACCTTTCACTCTCCTGTTGNGTCATT
CTTGAAGATGAGATGAATTTCTTATAAAATTTTTATAACTTCAAAGCAAA
ATCCCCCAAGTTGTATTTTACTGCTTTACCTATTCTACTAACCCAAGAAA
AAAAATTTGGGAGTCGAGGCCACTAATATTTAAAGGTATTACTAAAGAGT
GTGCATTGATTGCTCTTCTTTCTTTTTGTGGTTAGCGTTCTTAATCATCT
TTATCTTTCAGCAGTTATAATTTGATTTCTTTTCTTTCTGTACCTTGATA
GCTACACTTATTTCCCTTTATCGCAACAGTTGTAACATTTAACACAATAT
TACGCACAATATATGAGACATCCATTGTTTTTTTTGATCCCATCTTTAAC
TTTGTTAACAGAGGCCCCCCGCTTGTTGTTTTCTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGTGAGTGTCTGGCACACATAT
CCACATGCATGTGCACAAACATGTGTGTTCGTGAGCATACACATGTACAC
ACTCACTCCCTTGCCCACACACACCAATTTAATTCACAAAATGAAAAAAA
AAACCTTAAAAAATAGAAACTGTATAAAAACCAGTCAATAAAAGGAATCG
TCTCACATAAACATCTAAACGTCTGAGTGGCATGAAAATATTAGAATAGG
ATTGAGAAGAACAGAACCTTCTTCATTGTTGGGAGCAAGTTCCCAGGAAA
CTCAAGGATCTACCTAAATCCTNNTACCCAGNCGCCTTTGGGGTTCTTGT
CTCACAGATTTGAAGAATCAAAAAAACAAACAACAATGGGTAGAACATTA
GGGAGAAATTTATTACCGATTCATAGCTGGAATCTTAGGAGGGAGGGAGA
GGAGAAGGAGAGTTCCTGCAAACACAGGTCCCAGGAAACACTGAACCAAG
GAGCTACAAGTCCGGGAGACTTTTAAAGAATTTAGGCCTGAAACTGAGGT
GATTGGGAACGGGATGAACAGGGCGAGGTTACTCAACCAAACAAGTGACT
AAGTTCCCCCTTTAAAATATCCACGCCCCACTATCTTGGACTTCTATGCC
CAAAGCTTAAAAATTTATATAGATTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_m03.g1 MSMg01no276_m03.g1 CHROMAT_FILE:
MSMg01no276_m03.g1 PHD_FILE: MSMg01no276_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:45 2005
         (283 letters)



>mm_chr9_75647654_75648338
          Length = 685

 Score =  472 bits (244), Expect = e-137
 Identities = 270/284 (95%), Gaps = 10/284 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtgagtgtctggcacacatatccacatgcatgtgcacaaacatgtgtgttcgtgagc 60
           |||||||||||||||||||||||| |||||||||||||||||||||        ||||||
Sbjct: 209 catgtgagtgtctggcacacatattcacatgcatgtgcacaaacat--------gtgagc 260

                                                                       
Query: 61  atacacatgtacacactcactcccttgcccacacacaccaatttaattcacaaaatgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacacatgtacacactcactcccttgcccacacacaccaatttaattcacaaaatgaaa 320

                                                                       
Query: 121 aa--aaaaaccttaaaaaatagaaactgtataaaaaccagtcaataaaaggaatcgtctc 178
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaataaaaaccttaaaaaatagaaactgtataaaaaccagtcaataaaaggaatcgtctc 380

                                                                       
Query: 179 acataaacatctaaacgtctgagtggcatgaaaatattagaataggattgagaagaacag 238
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acataaacatctaaatgtctgagtggcatgaaaatattagaataggattgagaagaacag 440

                                                       
Query: 239 aaccttcttcattgttgggagcaagttcccaggaaactcaagga 282
           | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccttcctcattgttgggagcaagttcccaggaaactcaagga 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 685
Length adjustment: 9
Effective length of query: 274
Effective length of database: 676
Effective search space:   185224
Effective search space used:   185224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)