BAC Information

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BAC

Clone NameMSMg01-276N09
Chromosome9 (Build37)
Map Location 35,551,974 - 35,552,282
singlet/doubletsinglet
Overlap genenone
Upstream geneKirrel3, St3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846
Downstream geneD730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276N09.T7 (MSMg01no276_n09.b1)MSMg01-276N09.TJ (MSMg01no276_n09.g1)
ACCAG414907AG414908
length751758
length of high quality
(start - end)
313 (45 - 357)289 (78 - 366)
definitionCHROMAT_FILE: MSMg01no276_n09.b1 PHD_FILE: MSMg01no276_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:51 2005CHROMAT_FILE: MSMg01no276_n09.g1 PHD_FILE: MSMg01no276_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTAAATTACACAGATAGTTATGTGTAGCATCTAGTGTTTTTAAGA
CATTTGAAAATATAGTTGTACCCATTATGGAAACTTTATGTATAGTATAT
ATCATTGAGATGAATCATCATGCTTGAGTACAGGTAAATGCTCAAATAAA
GAAATGACACATTAGATTCTGAACCTAAATGAGTCTACTACTCTGTTTGG
GGAAACATAACAAAAAAGTTGATATTTAACTCAAGGAAGAAGTGAAAATC
CATCAATGTGAGAGAAAAGAACATTCTCAACATAGCATCAAGCATGGGTT
AACCACCATTTTATTTTGAATGCCGACCGCGAGAGAAAATGAGTGGGTGG
TACAGAAGGAGTGTACATCCAGAAGTAAAGAAGATAAGATGGGAACAGAA
CCAGAAGGATGGTATGATTAGATCTCCTCCTTTGTTCTCCATTTCCTTGT
ATTCTCTGAACTTTTGTGTATACAGTGAAACTGTCCATTGTGAAATGGAT
ATGGTGTCATCAACGTATTTAGCTAGAGTGACAATCAATGGGCACTTTAT
ACTAGGATAGTCTGTGACAGTAGTTATTTCATTCAGGACAATAACCCGGG
AAGCTTCCTATCCCTCTCAAGAGTGCTGGTAGAGCACTGTGTGAGTAGCT
CTGAAAACTTGGGAACTGTCTCACTTCTCACATGTAAGATAAACATTGAA
N
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCTAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
GTAAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCTTTTTTATATACCCCGAACATGTCCCAACCAGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAAACTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATTCAGAAA
ATCTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGGCAAATGGATGGATCTGGAGGGCATCGTCCTGA
GTGAGGTAACACATTCACAAAGGAACTCACACACTATATACTCACTGATA
AGTGGATAGTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTT
GCTAAACACATGAAACTCATGAAGAATGAAGACTGAAGTGTGGACACTAT
GCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_n09.b1 MSMg01no276_n09.b1 CHROMAT_FILE:
MSMg01no276_n09.b1 PHD_FILE: MSMg01no276_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:51 2005
         (313 letters)



>mm_chr9_35551770_35552482
          Length = 713

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattaaattacacagatagttatgtgtagcatctagtgtttttaagacatttgaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcattaaattacacagatagttatgtgtagcatctagtgtttttaagacatttgaa 454

                                                                       
Query: 65  aatatagttgtacccattatggaaactttatgtatagtatatatcattgagatgaatcat 124
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aatatagttgtatagattatggaaactttatgtatagtatatatcattgagatgaatcat 394

                                                                       
Query: 125 catgcttgagtacaggtaaatgctcaaataaagaaatgacacattagattctgaacctaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 catgcttgagtacaggtaaatgctcaaataaagaaatgacacattagattctgaacctaa 334

                                                                       
Query: 185 atgagtctactactctgtttggggaaacataacaaaaaagttgatatttaactcaaggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atgagtctactactctgtttggggaaacataacaaaaaagttgatatttaactcaaggaa 274

                                                                       
Query: 245 gaagtgaaaatccatcaatgtgagagaaaagaacattctcaacatagcatcaagcatggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gaagtgaaaatccatcaatgtgagagaaaagaacattctcaacatagcatcaagcatggg 214

                    
Query: 305 ttaaccacc 313
           |||||||||
Sbjct: 213 ttaaccacc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)