BAC Information

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BAC

Clone NameMSMg01-277C04
Chromosome9 (Build37)
Map Location 75,332,134 - 75,332,371
singlet/doubletsinglet
Overlap geneLOC100042070
Upstream geneLOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190
Downstream geneTmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277C04.T7 (MSMg01no277_c04.b1)MSMg01-277C04.TJ (MSMg01no277_c04.g1)
ACCAG415122AG415123
length749751
length of high quality
(start - end)
365 (383 - 747)239 (130 - 368)
definitionCHROMAT_FILE: MSMg01no277_c04.b1 PHD_FILE: MSMg01no277_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:13 2005CHROMAT_FILE: MSMg01no277_c04.g1 PHD_FILE: MSMg01no277_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGGCCTTCCTCGCCACCACCACTCAAGTGCTAGGATTACGGATGT
GCACCGCCACAGCCAGTTTGTGCCCTGCTGAGATCTGAACCCAGAGCTTC
AAACAAGCTAGGCTCTCTACCAACTCAGTTACATCCCGGCTCTTGTGTGC
CACTCCTATTGGAGAAGGAGCTCTGCGGTAGGGCCGTGTGGGCATTTCTG
AGTGCACTTGGTGCATCCCTCTCTGCTCAAGGGTGGTAGGGGGATGTGCA
CGGAAGTGTGGGATGGAGGCTTGTCTCAGTTAGGATTCTACTGCCGAGAA
GAGATGCTGTGACCTTATTAACTCTTACAAAGGAAGGCTGGCTTACAGTT
CAGAGATTTAGTCTGATACTGAAATGGCAGAAAGCATGGTAGTGTGCAGG
CAGACATGGTGCTAGAAAAGGAGCTGAGAGTTCGATCTTTGGGTCCACAG
GCGGCAGCAGAAGACTGTATCCCACACTTGCCAGAGTTTTAAGACCTCAA
GCCCTCCCCAAGTGACATACTTCCTCCAATAATGCCACACCTACTCCAAC
AAGACCACATCTCCTAATAATGTCACTCCTTAAAGGACCAAGCATTCACA
CACATGAGTCTATGGGGGCCATTCAAATCACCACAAGACTGGAAACACTG
AAGATTCTGGAACAATCTTTGGATTACCAGTAACCTTTTCTCTTTAACG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAGAAGGCATTCCTCGAAGCTT
TGTCTACACTAGTTCTGAATTGGTCGCCAGAAATCTGCCACAGAGACCTG
TGTTCAGGTCACAACACCTGGGAAGACAGACCCCTGGGACCTGGCTGCCC
TGGGTGGCTGTCACGGTAGGAGGGACACTTCATTCAGTGCGGCATTTCTA
TCACATTACTTGAAGTACATTATTTTCTTTAAATGCTTCTATAAATTCAG
TGTTTTAAAGTCTGATTTTAGAGGCTGAAGAGATGGCTCTTTTGAGAGGC
CTCAGGTCTGGTTCCTGTTTTTTCATGCCGCCTCATAACCACCTGTCCCT
CTATTTAGGGTAGGGAAGGTTCCATCATTGATTACAGAACCACAGGCGCT
GTGTGCATGTGGTATACATGCAAGGAAAACACTCATAAATAGAAAAAAAT
CTTACAAGACTGAATTTTCAGAATGCTTATGTATGTTTTAAAATTATTTA
CATCTGTATACACACATAAAAATGAGTTGACAAGTGTCTTAGTCAGGGTT
TCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGGAGGAAAG
GGTTTATTCAGCTTACACTTCCATACTGCTGNTCATCACCAAAGGAAGTC
AGGACTGGAACTCAAGCAGGTCAGAAAGCAGGAACTGATGCCGAAGCCAT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_c04.g1 MSMg01no277_c04.g1 CHROMAT_FILE:
MSMg01no277_c04.g1 PHD_FILE: MSMg01no277_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:13 2005
         (239 letters)



>mm_chr9_75331934_75332572
          Length = 639

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaatctgccacagagacctgtgttcaggtcacaacacctgggaagacagacccctggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaaatctgccacagagacctgtgttcaggtcacaacacctgggaagacagacccctggga 379

                                                                       
Query: 61  cctggctgccctgggtggctgtcacggtaggagggacacttcattcagtgcggcatttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cctggctgccctgggtggctgtcacggtaggagggacacttcattcagtgcggcatttct 319

                                                                       
Query: 121 atcacattacttgaagtacattattttctttaaatgcttctataaattcagtgttttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atcacattacttgaagtacattattttctttaaatgcttctataaattcagtgttttaaa 259

                                                                     
Query: 181 gtctgattttagaggctgaagagatggctcttttgagaggcctcaggtctggttcctg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtctgattttagaggctgaagagatggctcttttgagaggcctcaggtctggttcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)