BAC Information

Click to search

BAC

Clone NameMSMg01-277N11
Chromosome9 (Build37)
Map Location 52,337,070 - 52,337,358
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik, Atm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277N11.T7 (MSMg01no277_n11.b1)MSMg01-277N11.TJ (MSMg01no277_n11.g1)
ACCAG415630AG415631
length735734
length of high quality
(start - end)
318 (43 - 360)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no277_n11.b1 PHD_FILE: MSMg01no277_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:02 2005CHROMAT_FILE: MSMg01no277_n11.g1 PHD_FILE: MSMg01no277_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGGAATACCCCTCCATGCACAGGAGGCATTATCTGGTACCCTAAGCT
GTAGCCCATGATAGGTAGCTCCCCTCGAAATCTCAAATACTATATAGCCC
TTTGTCAGCTCTTTGCCAGCAGGTTCAGGCAAGAGGAGAGTACCCAGTCC
AGCCGGGTCTGTCGGGGCTGAGCAGGATGGTGAATGTCCACAGCCCAAAA
GAATAACACCAGGTTGGGAGTCTTGTCTAAGCAGGAACTTGCTTTAATGT
GGCAGTAATTTGCTTATATAGACAGGGCAAGGAGGTGGGGATAGAAGTAT
GGGGTGAGATGTTGTATGCCCCGCCCCCCCCCCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAANAAGGGGGGGGGGG
GGNNNNNNNNAANNAAAAAGAAAAAGAAAAAAAAAAGGAAGGAGAAAAGA
AAGGGAGAAAAAAGGCCAACAAAACGGGCAAGGAGCCCGCCAGAACGAGA
CCCGAGCAGCCGCGCCGAACGGGCCACGCCAGCGAGGGGCAACACGAGAA
CAAAAGACCCAACGGGGAAAACACCGGAACCACGCACACCAGCGAACATC
ACCACACCCACACAAGGGACGAAGAGCAAGATACCCACAACGACATAACG
AAAACGGACTGAGACACTATGTTTGTATCCCTTGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTCCTGTCCCATGTGACAAC
ACAGACTTCAGTGGGCAGGAGCTACCACTGCAGCCTAGACCAGCTCCTAG
TGTGTTCTTTGTCTCTTTTAATGAGCTCATAACTGTATAACTATGTAAGT
GATGATTCCAAGTAAGGCATACTGGGTTTATATTTTACAGTCTTGTCAAC
CAGAGAGAGAAATAAGATATTCTCTCTGGTTATATAGTTTCCAGTTTGAA
ATTAGTAGGGAAAGCAGCAATGGGTCAGTTTAGTGGAAGCACAGCCAACC
TTAAGTCATCACTGATTTTATGCTGCCCCCCCCCCCCGTTGGTGCCCAGA
TCATAGTCAACTACTGCGTCCATGAGGCAGTCACATCAGATCAATTTACA
GGGTGCCATGCTATTGAGGAAATGGGAGTGGAGGAGGGCAGTCTCAGAAG
TTGAAATTTTTGATAGCTGGAGTCAAGATTTATATGATTTCTATTAATTG
ATATCTTGCAAACTTTGAGAATTGATATTGAAATTCGGTTGTACTAAATA
TGTGTAGTATCCTAGGTGTATATTTGTTAAGATTCCATTCCTTTCAGTAA
CAAAAATGTCAGCAATGTGAGGAATACACCTTGCATACTTAGTGCACTGA
GACATGATGCTCAACAGACAGTAGCAATAACTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_n11.g1 MSMg01no277_n11.g1 CHROMAT_FILE:
MSMg01no277_n11.g1 PHD_FILE: MSMg01no277_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:02 2005
         (289 letters)



>mm_chr9_52336870_52337558
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttcctgtcccatgtgacaacacagacttcagtgggcaggagctaccactgcagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcttttcctgtcccatgtgacaacacagacttcagtgggcaggagctaccactgcagcct 430

                                                                       
Query: 61  agaccagctcctagtgtgttctttgtctcttttaatgagctcataactgtataactatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agaccagctcctagtgtgttctttgtctcttttaatgagctcataactgtataactatgt 370

                                                                       
Query: 121 aagtgatgattccaagtaaggcatactgggtttatattttacagtcttgtcaaccagaga 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 369 aagtgatgattccaagtaaggcatactggatttatattttacagtcttgtcaaccagaga 310

                                                                       
Query: 181 gagaaataagatattctctctggttatatagtttccagtttgaaattagtagggaaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gagaaataagatattctctctggttatatagtttccagtttgaaattagtagggaaagca 250

                                                            
Query: 241 gcaatgggtcagtttagtggaagcacagccaaccttaagtcatcactga 289
           |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gcaatgggccagtttagtggaagcacagccaaccttaagtcatcactga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)