BAC Information

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BAC

Clone NameMSMg01-278C03
Chromosome9 (Build37)
Map Location 116,362,255 - 116,362,443
singlet/doubletsinglet
Overlap genenone
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneRbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278C03.T7 (MSMg01no278_c03.b1)MSMg01-278C03.TJ (MSMg01no278_c03.g1)
ACCAG415842AG415843
length731814
length of high quality
(start - end)
---189 (219 - 407)
definitionCHROMAT_FILE: MSMg01no278_c03.b1 PHD_FILE: MSMg01no278_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:22 2005CHROMAT_FILE: MSMg01no278_c03.g1 PHD_FILE: MSMg01no278_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCCTCTTTACCTTATCTTCAGATGACTGTTATTCCTAGGCAGA
AAGATCAGGATGTCCCTCTGACTCCCTTTGCTCACACGAGGCATATGCCA
GCCAAGTTCTCAAAGTCATCTTCTTTTCAGGAACAGAACCCACTCTTTCA
GCACCATGGAGACAAACATGGTTCTCAAACCTCTGCCTATGCTGCAGAGG
TCTTTTCCAGACTAACAGCTGCTCTCCTGCAACAGGGTCAGTTATCAAAT
CTAATGATTGGTGTTCTATCCTGGGAACCATGGGATGGCGGGAGAGAACT
GAAGTCTGTGATTTGTTCTCTGACCTCCTCGCGAATACTGCTGCCTGTAT
ACACTAACATGCGCGCACGCATACACACACACAGACAAAAGCGTGCATTA
CAGAATATACTCAGACACGGAAGCGTTCTCACACAGATGGACTCACACAC
AGTACAGAGTCACACATAGAGACGCACTGATGCTCTCATACACATGCATT
CGCACACGTACATAGACAAATACGCTCTAACTAGCATGCACGCACAGAGA
CTGAGAGACCCCGGACACCCTCACATACATGTATACTTATAGATACACAG
ATCACAGACACTCTTCTCATACATGATCACACCCAGACACACCAAAGTAT
AGTCCCATACACAGAGAGACCCACATTGTGG
TTTTTTTTTTTTTTTTTTTTTNNTTTGGNGGCCGGCCNTTCTTCCNNNCC
TTCCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGGTGCTCAGACAGCCGAGT
GGGTAGAGAGGCCTGGTGTAGCCCCGAAATTTTCCTCATCAGAACTCAAA
GCTTGAAGGCAAAAGCCAAAGTGCCTGGATTCGAAAAGAAAGTCCTGTGG
TGACTCATGAATACTAATATCCCGTCAAGTTGTCATTCTAGAATAAAGGT
CAGAGCTGGGTAAACAAGCAAGAACAGCAGCCATAGGCGCTGATGGATTG
TCCATGGCGTGAGAGAATTTGTTTATTTCCCAATAACTAGGAAATGTTCC
CCAGAACTTGTTTTTTTTTGTCCTGCACCCCCCCCCCGAATGTTTAGGAA
AAGTGATGAAAAACAATGTAAGATTAGATTCTAGATTAAATGTTGGTGGG
GTTTTATGCCCTACCCAGACCTACTGGCACCGTCAAACTAACTTTTATGA
AGAATACTCTGGAAAACAAATTGAAGAATAAATTTATTGTGAGCTATATA
TTAAAAAAAGCCCGAAATAGAACTCTATGGTAAGGTATCCAACCAACCCT
AAGTTTTAATTGTTTCCTAATTTCCCTTATCTTAGCCTTACACATTTTTT
ACTATTATTTACTATGGTGTGAAGGCTGGAAAAAAAATGTGTTTCCTAGG
GTTTTGTAAGGGCTGGTCGCAATCCCATTCTTGATTGGCGCTTTCTCGTG
GGCAATTTTGGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_c03.g1 MSMg01no278_c03.g1 CHROMAT_FILE:
MSMg01no278_c03.g1 PHD_FILE: MSMg01no278_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:22 2005
         (189 letters)



>mm_chr9_116362055_116362643
          Length = 589

 Score =  281 bits (145), Expect = 3e-80
 Identities = 178/189 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtgcctggattcgaaaagaaagtcctgtggtgactcatgaatactaatatcccgtcaa 60
           ||||||||||||||| ||||||| || ||||||||||||||||||| ||| ||| |||||
Sbjct: 201 aagtgcctggattcggaaagaaaatcgtgtggtgactcatgaatacgaatgtcctgtcaa 260

                                                                       
Query: 61  gttgtcattctagaataaaggtcagagctgggtaaacaagcaagaacagcagccataggc 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 261 gttgtcattctagaataaaggtcagagctgggtaaacaggcaagaacagcagccataggt 320

                                                                       
Query: 121 gctgatggattgtccatggcgtgagagaatttgtttatttcccaataactaggaaatgtt 180
           |||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gctgacagattgtccatggcgtgagagaatttggttatttcccaataactaggaaatgtt 380

                    
Query: 181 ccccagaac 189
           |||||||||
Sbjct: 381 ccccagaac 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)