BAC Information

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BAC

Clone NameMSMg01-278F12
Chromosome9 (Build37)
Map Location 60,658,357 - 60,816,996
singlet/doubletdoublet
Overlap geneUaca, ENSMUSG00000052143
Upstream geneMyo9a, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447
Downstream geneA430102L10, LOC100040481, Tle3, LOC100039851, Rplp1, Kif23, Paqr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278F12.T7 (MSMg01no278_f12.b1)MSMg01-278F12.TJ (MSMg01no278_f12.g1)
ACCAG415993AG415994
length714716
length of high quality
(start - end)
180 (101 - 280)284 (58 - 341)
definitionCHROMAT_FILE: MSMg01no278_f12.b1 PHD_FILE: MSMg01no278_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:39 2005CHROMAT_FILE: MSMg01no278_f12.g1 PHD_FILE: MSMg01no278_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,816,817 - 60,816,996)(60,658,357 - 60,658,636)
sequence
GTACGATTCGNGAGCAGAGGCGCGGAANTCACTATTGACAAAAGGGAAGC
GNGAAAGNCCAGAGGACAAGGGAGAGCTGACACACAGCAGGGAGAGCCCA
CAGAGGCAGACTGCAGCCAGCCCTTATCTGGGCGACCTTGGGCAAGTCTC
TTGACCCAGAGAACGAACTTCGGCCACCACTAGTGCATTCAGAGAGATCT
ACAGGGCTTTCTCAGTCCAGAGAAACTATGGGCTTGTGAGAGGTGCTGAG
GCTTATGCTCGTCTCGTAAGGGCCCCTAAAGGCAGCGAGGGATTTCTAGT
TTGCNCNCAGGCTAGCTGCGCCCCATCACTGTTTTTTTTTTCCCAAACCA
NAAGCCCATGAAGAGAGGGNAGCCGAATCACTCCTAGGACAGCTCAAAAA
AAAAAAAAAAAAAATGTTGTGGGGTGGTGGATGGCCATAGGTTAATGAGT
TACTATAAAAACCATCCCTGCCATCTGTTGGCTGTCTCCAAAGCCAGCAT
GAAGGAGAGGTTCCGATTCGTTAGATAGGATTGACTAGATTCCCTAAGTC
ATGACATATCCTGACGTGATGATCTCCTGCAGCCTGAAGTTCCTAATTTG
ATCCTGCCGCTCCCAGAAGACCCTCAGTTTTTTTGTTTTGCTACCAGCCT
CGTTAAATATTTTTCGCATGTACGTCGGCCAACTCCATCTGTTGATTTTC
TTATCATCCCCTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGCAGCCGAATGACAGGAAACTTCAGATGGACTCCCTAGGAA
ACTGCTGCCCGACAGCCATAGCAACGCCGTACTCCGTGGCTCTGACTCTT
TGCGCTGTGATAAGTAAATGCTTTCCTGTGTGTGGGCTGACTTGTATGTG
TGCGTTTGTGTGGTGCGATAATATATTTTCATGTATGTGCGCCTGTGGGG
GCCAGAGATCTATGTTGGGTGTCTGTCTCCCTGTGTGATTACCCACTTGT
ATTTTGGTTCAGGGTCCCTCAGTGAACTTAGAACTCATTTTTNCTANCGC
CTTGGCCAGACCACTGCCTGCCCTCCTCCAGCACTGGGGCTAGACCTGTG
CATAGAAATAATTAACTTTCGTGTGTGCGTGCATGCATGCGTGCGTGCAT
GAGTGTAGTCTAGGGAATATATAACAAAAAACTCAGCCCATGTCTTTAAA
TGTCTAAAGCTTTTTTAAAAATTATTTTACAGTTCACGAGTTTTAAGGAT
ATAATATTATTTTCACATAGCTTCTATAAAACTATTGAACTATTCCTAAT
ACCTCGTATGATTCTGGAAATTAGATTATTGCTTCCCATATTTTACCCAT
TTAAACACATTTTCCAGTTTATTATTCTAGCTCACAAATTACTTTTTCCG
CTCGCTCATTTAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_f12.b1 MSMg01no278_f12.b1 CHROMAT_FILE:
MSMg01no278_f12.b1 PHD_FILE: MSMg01no278_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:39 2005
         (180 letters)



>mm_chr9_60816617_60817196
          Length = 580

 Score =  302 bits (156), Expect = 1e-86
 Identities = 174/180 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaggcagactgcagccagcccttatctgggcgaccttgggcaagtctcttgacccaga 60
           |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 380 cagaggcagactgcagccagtccttatctgtgtgaccttgggcaagtctcttgacccaga 321

                                                                       
Query: 61  gaacgaacttcggccaccactagtgcattcagagagatctacagggctttctcagtccag 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 320 gaacgaacttcggccaccactagtgcattcagaaagatctacagggctttctcagtccag 261

                                                                       
Query: 121 agaaactatgggcttgtgagaggtgctgaggcttatgctcgtctcgtaagggcccctaaa 180
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 260 agaaaccatgggcttgtgagaggtgctgaggcttatgctcgtctcataagggcccctaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no278_f12.g1 MSMg01no278_f12.g1 CHROMAT_FILE:
MSMg01no278_f12.g1 PHD_FILE: MSMg01no278_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:39 2005
         (284 letters)



>mm_chr9_60658157_60658840
          Length = 684

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcagccgaatgacaggaaacttcagatggactccctaggaaactgctgcccgacagcc 60
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ctgcagccgaatgacatgaaacttcagatggactccctaggaaactgctgcctgacagcc 260

                                                                       
Query: 61  atagcaacgccgtactccgtggctctgactctttgcgctgtgataagtaaatgctttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagcaacgccgtactccgtggctctgactctttgcgctgtgataagtaaatgctttcct 320

                                                                       
Query: 121 gtgtgtgggctgacttgtatgtgtgcgtttgtgtggtgcgataatatattttcatgtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgtgggctgacttgtatgtgtgcgtttgtgtggtgcgataatatattttcatgtatg 380

                                                                       
Query: 181 tgcgcctgtgggggccagagatctatgttgggtgtctgtctccctgtgtgattacccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcgcctgtgggggccagagatctatgttgggtgtctgtctccctgtgtgattacccact 440

                                                   
Query: 241 tgtattttggttcagggtccctcagtgaacttagaactca 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtattttggttcagggtccctcagtgaacttagaactca 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)