BAC Information

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BAC

Clone NameMSMg01-278H04
Chromosome9 (Build37)
Map Location 36,756,526 - 36,756,792
singlet/doubletsinglet
Overlap genePknox2
Upstream geneEG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1
Downstream geneLOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278H04.T7 (MSMg01no278_h04.b1)MSMg01-278H04.TJ (MSMg01no278_h04.g1)
ACCAG416069AG416070
length682938
length of high quality
(start - end)
279 (4 - 282)97 (132 - 228)
definitionCHROMAT_FILE: MSMg01no278_h04.b1 PHD_FILE: MSMg01no278_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:47 2005CHROMAT_FILE: MSMg01no278_h04.g1 PHD_FILE: MSMg01no278_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGATCCGCGGAATTCACCTTGGTTTGTTGAGTGACAGTTGGACTTAGCAT
GAGATCTCAGGGGGTGGGACACACCAGTGTTGAGGCTCTCTGCTGAATAG
TTCATGGGAACTGGGGGACTGGTTTAAGTCTTCGGTGTGCAGTATGCAAA
AAAACACCAAGAAAACAAAGAGTGGGGGAAAGGGTTTAAAGCAGGGCTTC
TGGAATTGCCATAAAGGAGTTCTCTCACTGGTAAGCCGGCAAAGGCTCCT
GAACCAGGGCGGATGCTGAGAGTGGGCTTGTTTAAGCAGAGAGAAACAGT
ACTGAGTAGAATCCTCTAACTGAATTCCNTTGGCCTTGCCATTCAGGTGT
GGAGCACCATGGTGCTTACACACGTATCCAAAAAATAAAACACCCTCAGC
ACTTTCTGAAGTATTTAAGTCATTAAAGAGAGAACATTTCAAGTTAAGAT
CCCAGAGTTAGACCCGAAGGGACAGACCGGGGAGAGGATGAGCAAGGCCA
TTGAAAGCTAATGAATCTGCACACAGGATCATCTCCCTCCCTCTATCAGC
AACATAGACTGTGTGCCTGTGACATGGATCTTCGAAATTGGATTGTACTG
AGACCTTTCTGTGTATTTCTTTCCAATTCTTCAGAACAAGTTTTGAGTGC
GTCATGTTATGTACTTTTTACATTACTAAATT
CCCCCCTCTTCTTTTCTTCTCTTCTCTATTTCAATNCTTCTCCCATTACT
NNCCCACTATGATACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAATCTGCCCTCCTTG
CTTTGGGAGGTCATCTTGCCCTTACCCCAGGAGCCCACACTGTTCTTGCT
CTAAGGCCAAAGTTTGCATTCAAGGCACAGGCAAGTGCATGGAATCTCCT
TTCTTCTGTTCTCCCTTCTTTCTTCTCCTCTGTCTGCTACAAGAAAGAGC
TCATAGCTACTTTGCTTGAGAAGCCATGTTGCCAATGCCTCGTTGCCCCC
ATCGGTAAATATGAACATCCCTGGGGTTCCAAATAGATCTCTTTTTTTAA
ATATTTTCAAAACCCTAAAAAAAAGCGGGGGGTTCCCCCTTTTTTTTTTT
CCCCACCACCCCCCCCCCCCCCCTTTTTTTCTTGTAAAAGTGGAATCGGA
ATATACTCCCCCCAATCGCATAGGGTGACACAATTTTTTCTTTGGGGGGA
ATAATAAAACACCCCCTTATCTTATGTTCTTCCCCTTCCACTTCCATTTA
ACACCCCCCACTCCCTTCGCGCTTAATATATTTGTGTGCAGGATAAAATA
CACCCCCCCACCCACCACTTTTTATCTTTTTTTATTTATTTTTTCCACCT
TTTCTATTTCCTTCCATTATATATCTACTTTCTCTCAATACTCCACCCCC
GCGCCATTTATCCTCCCCCTCCCTTTTCAATCTAATAACCATTCGCGCTT
CAAATTACCATTTCACGAACTCTTTTTCGTACCTCATCTTTTTTGGCACT
TCCCTTTACGATCTCTTTAGTAATTATTCCATCATTCTCATAATTCACTT
TTTATATTTTCCTCCCCAGCATATATATACTATATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_h04.b1 MSMg01no278_h04.b1 CHROMAT_FILE:
MSMg01no278_h04.b1 PHD_FILE: MSMg01no278_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:47 2005
         (279 letters)



>mm_chr9_36756321_36756994
          Length = 674

 Score =  453 bits (234), Expect = e-132
 Identities = 261/272 (95%), Gaps = 5/272 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcaccttggtttgttgagtgacagttggacttagcatgagatctcagggggtggg 65
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 206 ggaattcaccttggtttgttgagtgacagttggacttagtatgagatctcagggggtggg 265

                                                                       
Query: 66  acacaccagtgttgaggctctctgctgaatagttcatgggaactgggggactggtttaag 125
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 266 acacaccagtgttgaggctctctgctgagtagttcatgggaactgggggactggtttaag 325

                                                                       
Query: 126 tcttcggtgtgcagtatgcaaaaaaacaccaagaaaacaaagagtgggggaaagggttta 185
           ||||||||||||||||||||||||| |||||||||||||    |||||||||||||||||
Sbjct: 326 tcttcggtgtgcagtatgcaaaaaa-caccaagaaaaca----gtgggggaaagggttta 380

                                                                       
Query: 186 aagcagggcttctggaattgccataaaggagttctctcactggtaagccggcaaaggctc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 381 aagcagggcttctggaattgccataaaggagttctctcactggtaagccagcaaaggttc 440

                                           
Query: 246 ctgaaccagggcggatgctgagagtgggcttg 277
           ||| |||||||||||||||||||||| |||||
Sbjct: 441 ctggaccagggcggatgctgagagtgagcttg 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 674
Length adjustment: 9
Effective length of query: 270
Effective length of database: 665
Effective search space:   179550
Effective search space used:   179550
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)