BAC Information

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BAC

Clone NameMSMg01-279G19
Chromosome9 (Build37)
Map Location 115,389,492 - 115,541,513
singlet/doubletdoublet
Overlap genenone
Upstream geneCcr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
Downstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik, Rbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279G19.T7 (MSMg01no279_g19.b1)MSMg01-279G19.TJ (MSMg01no279_g19.g1)
ACCAG416793AG416794
length745745
length of high quality
(start - end)		676 (67 - 742)354 (385 - 738)
definitionCHROMAT_FILE: MSMg01no279_g19.b1 PHD_FILE: MSMg01no279_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:00 2005CHROMAT_FILE: MSMg01no279_g19.g1 PHD_FILE: MSMg01no279_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,389,492 - 115,390,167)(115,541,198 - 115,541,513)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATAATCACAGGCTACAATTGGGGTACACGGGACCACTGAAGGGA
AGGTCTAGTCTTCTGGAAGTGCTTTGAGCTGCTGAGGGAGGCAGGACTGA
GAGGGCTGCAGAGCAAGGCTGTCCAGGTTAGCACAGCTCTGGCTGGCCAC
AGATGATCTCACTGAGTGACCTCACCTTGAGGCTAGGTACTGGGCTCTTC
AAGGTTTTAGATCTATTTCATCCTTTATTGTTGATATTCTCCTCTTTGAT
TGCATACACGTCTAAATATTTCTTTGGGCAAGTAAGTCTTCAGCCAAGTC
GTACTACTTCCTGGCAAGATTGCCATGAGCTTCAGCATTTAGAACCCGAG
GAACCGTTGGCTTTGGTCATCTTGGTAGAATTAAGAAGTACCCAGGGCGT
GAATGGCGCCCCTTTGAGTTGAGTGTGCCTGCTCGGGTGTTTCCAGAGAG
GAGTGACTGAAGGGAGAAGACAGACTGAATGTGGACAGCACCACCCGTGG
GGCTGTGGTTCTAGACTAAGTGAAAAGGAGAAAGACAGTTGAGGACCAGC
AGTCATCTCTGTCCTCCCAGACTCGGTGGGCATAGCCAGCCAAAACCAAG
GTCTACTGCAAGGTACCTGTTGGGTGCAAGCATCCTTAAGAGTGCCAACA
GGAGTAGATTCTCGAAGTGTACATGGCTTTTCTGTTCCACGTCAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTACATTCACCAGAAACTGCC
ATGTACATAGGACTCAGACTACGCGTATGTTGCCACATGTAACCCCAACA
CTTAGAAGGCTGAGGCAGGAGAATCTCTGAAGAATGTGTATAACAATTTC
CTTCTAGTTGAAACATTATCTTTAAGAGAGAGAATCATAAAACTCAGGAA
GTAAACAACTTGCAAGTCTCAAGAAGTTCCTGAAATTAACAAAGCTCACA
GGTCATTCCCCAACCTTATGGAAGTAGCAAACAGTGACCTGGGAGGAAAG
TCTCCAAGCCTATCTGTGTACAACCGAACTCTGACACACTGAGCAAGATG
CAAGTTGTACAGATAGCTTCAGGGATACAATATTCAGAGTTGACACCCAT
ACTAGGGTGAGCATTTTAGTAATGGAGCTACCTTTGAGTCTTCTCTGCTC
CTCCAATAAACTCATTGGCTCACCATGTTGGACTTGGATAGAGTAATTTC
TTTGATCTGTCATTGGTGCCTTATCTGGATGGGTGGGTGAGAAGATGTTT
TCTTCACATCTCCTCTGAAAAAAAAGTCAAACCCACAACAGAAGTCATAG
CAAGACCCAGTGTAAGAGCAAAACCAGACACACAGAACAGAAGGCTGAAG
GAAGAAGTGGTTGTTGGAGCTGGAGAGATGGCTCAGTGGTTAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_g19.b1 MSMg01no279_g19.b1 CHROMAT_FILE:
MSMg01no279_g19.b1 PHD_FILE: MSMg01no279_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:00 2005
         (676 letters)



>mm_chr9_115389292_115390367
          Length = 1076

 Score = 1307 bits (676), Expect = 0.0
 Identities = 676/676 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctacaattggggtacacgggaccactgaagggaaggtctagtcttctggaagtgctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctacaattggggtacacgggaccactgaagggaaggtctagtcttctggaagtgctttg 260

                                                                       
Query: 61  agctgctgagggaggcaggactgagagggctgcagagcaaggctgtccaggttagcacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgctgagggaggcaggactgagagggctgcagagcaaggctgtccaggttagcacag 320

                                                                       
Query: 121 ctctggctggccacagatgatctcactgagtgacctcaccttgaggctaggtactgggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctggctggccacagatgatctcactgagtgacctcaccttgaggctaggtactgggct 380

                                                                       
Query: 181 cttcaaggttttagatctatttcatcctttattgttgatattctcctctttgattgcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcaaggttttagatctatttcatcctttattgttgatattctcctctttgattgcata 440

                                                                       
Query: 241 cacgtctaaatatttctttgggcaagtaagtcttcagccaagtcgtactacttcctggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacgtctaaatatttctttgggcaagtaagtcttcagccaagtcgtactacttcctggca 500

                                                                       
Query: 301 agattgccatgagcttcagcatttagaacccgaggaaccgttggctttggtcatcttggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agattgccatgagcttcagcatttagaacccgaggaaccgttggctttggtcatcttggt 560

                                                                       
Query: 361 agaattaagaagtacccagggcgtgaatggcgcccctttgagttgagtgtgcctgctcgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaattaagaagtacccagggcgtgaatggcgcccctttgagttgagtgtgcctgctcgg 620

                                                                       
Query: 421 gtgtttccagagaggagtgactgaagggagaagacagactgaatgtggacagcaccaccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtttccagagaggagtgactgaagggagaagacagactgaatgtggacagcaccaccc 680

                                                                       
Query: 481 gtggggctgtggttctagactaagtgaaaaggagaaagacagttgaggaccagcagtcat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtggggctgtggttctagactaagtgaaaaggagaaagacagttgaggaccagcagtcat 740

                                                                       
Query: 541 ctctgtcctcccagactcggtgggcatagccagccaaaaccaaggtctactgcaaggtac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctctgtcctcccagactcggtgggcatagccagccaaaaccaaggtctactgcaaggtac 800

                                                                       
Query: 601 ctgttgggtgcaagcatccttaagagtgccaacaggagtagattctcgaagtgtacatgg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctgttgggtgcaagcatccttaagagtgccaacaggagtagattctcgaagtgtacatgg 860

                           
Query: 661 cttttctgttccacgt 676
           ||||||||||||||||
Sbjct: 861 cttttctgttccacgt 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no279_g19.g1 MSMg01no279_g19.g1 CHROMAT_FILE:
MSMg01no279_g19.g1 PHD_FILE: MSMg01no279_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:00 2005
         (354 letters)



>mm_chr9_115540760_115541513
          Length = 754

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 37  agggatacaatattcagagttgacacccatactagggtgagcattttagtaatggagcta 96
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 agggatacaatattcagagttgacacccatactagggtgagcattttagtaatggagcta 695

                                                                       
Query: 97  cctttgagtcttctctgctcctccaataaactcattggctcaccatgttggacttggata 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 cctttgagtcttctctgctcctccaataaactcattggctcaccatgttggacttggata 635

                                                                       
Query: 157 gagtaatttctttgatctgtcattggtgccttatctggatgggtgggtgagaagatgttt 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gagtaatttctttgatctgtcattggtgccttatctggatgggtgggtgagaagatgttt 575

                                                                       
Query: 217 tcttcacatctcctctgaaaaaaaagtcaaacccacaacagaagtcatagcaagacccag 276
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tcttcacacctcctctgaaaaaaaagtcaaacccacaacagaagtcatagcaagacccag 515

                                                                       
Query: 277 tgtaagagcaaaaccagacacacagaacagaaggctgaaggaagaagtggttgttggagc 336
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgtaagagcaaaaccagacatacagaacagaaggctgaaggaagaagtggttgttggagc 455

                           
Query: 337 tggagagatggctcag 352
           ||||||||||||||||
Sbjct: 454 tggagagatggctcag 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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