Query= MSMg01no279_l24.b1 MSMg01no279_l24.b1 CHROMAT_FILE:
MSMg01no279_l24.b1 PHD_FILE: MSMg01no279_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:26 2005
(321 letters)
>mm_chr9_97282562_97283282
Length = 721
Score = 574 bits (297), Expect = e-168
Identities = 312/317 (98%)
Strand = Plus / Plus
Query: 5 gaattcctcaacaatgtgcttgacatacaggtggagtctttgttcaaaaccaagtctctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcaacaatgtgcttgacatacaggtggagtctttgttcaaaaccaagtctctg 264
Query: 65 agtaaattttaaagtgcgtaggaaccatggatttgctaggctcttaggactgctggtcca 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtaaattttaaagtgtgtaggaaccatggatttgctaggctcttaggactgctggtcca 324
Query: 125 catattttcagtgctgatgttgccagtttaccttatgtggcagttctgctttgttctggg 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagattttcagtgctgatgttgccagtttaccttatgtggcagttctgctttgttctggg 384
Query: 185 ctgcctttcatgctcccctgctgtgtccgtatctcccccatttctctattggttgccaga 244
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||
Sbjct: 385 ctgcctttcatgctcccctgcggtgtccgtatctcccccatttctctgttggttgtcaga 444
Query: 245 gttccccatcttgtctgcttacaatatgattttcttcccatccacagactcaaacaatag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttccccatcttgtctgcttacaatatgattttcttcccatccacagactcaaacaatag 504
Query: 305 atgttgaacgatcccgt 321
|||||||||||||||||
Sbjct: 505 atgttgaacgatcccgt 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no279_l24.g1 MSMg01no279_l24.g1 CHROMAT_FILE:
MSMg01no279_l24.g1 PHD_FILE: MSMg01no279_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:26 2005
(293 letters)
>mm_chr9_97411261_97411959
Length = 699
Score = 526 bits (272), Expect = e-154
Identities = 289/298 (96%), Gaps = 6/298 (2%)
Strand = Plus / Minus
Query: 1 cagaagagaaactcttggagatgaatgggcatgtgtcaggatttaaagggctggcctaga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cagaagagagactcttggagatgaatgggcatgtgtcaggatttaaagggctggcctaga 439
Query: 61 gctaaggataagcaaaaacaacaaagaatcctcaataaaacagaaagccaaacctcagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gctaaggataagcaaaaacaacaaagaatcctcaataaaacagaaagccaaacctcagca 379
Query: 121 agtgccaagtgccagggatcatctggccattcagttaaagtcagcaatcttacagagcaa 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agtgccaagtgccagggctcatctggccattcagttaaagtcagcaatcttacagagcaa 319
Query: 181 gggcagaagccagagcatcaaccccaaggttcag------aaaattgtcagatgcatgaa 234
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 318 gggcagaagccagagcatcaaccccaaggttcagaggaacaaaattgtcagatgcatgaa 259
Query: 235 gcaacaatggaatgcaaatgactatccagagtaatattgtgaagcagagtttgttgtg 292
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 258 gcaacaatggaatgcaaatgactgtccagagtaatattgtgaagcagagtttgttgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 699
Length adjustment: 9
Effective length of query: 284
Effective length of database: 690
Effective search space: 195960
Effective search space used: 195960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
