BAC Information

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BAC

Clone NameMSMg01-279M21
Chromosome9 (Build37)
Map Location 82,769,398 - 82,875,806
singlet/doubletdoublet
Overlap genePhip
Upstream gene4930486G11Rik, LOC100039085, Irak1bp1
Downstream geneLOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279M21.T7 (MSMg01no279_m21.b1)MSMg01-279M21.TJ (MSMg01no279_m21.g1)
ACCAG417064AG417065
length734736
length of high quality
(start - end)		686 (45 - 730)354 (383 - 736)
definitionCHROMAT_FILE: MSMg01no279_m21.b1 PHD_FILE: MSMg01no279_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:30 2005CHROMAT_FILE: MSMg01no279_m21.g1 PHD_FILE: MSMg01no279_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,875,140 - 82,875,806)(82,769,398 - 82,769,751)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAATTCCATAATGGAGATGTATAGATAGCCATTGATCCATATCT
CTTGCAGGCCATGCAATACCCTGAGTTATGGCTGCTAAATAAAGTCCAAT
TTTAATAATTGATCACTTATGGAGATGGGCCAGATCATCGACGAAACCTT
TGCTTTCCAGGTATAGCCCTTAGGGGGTGATGCTGCCACCTCAGGTTCAC
TCTCAGTCTCAGGACCACCCGTGCTGATCTGTGCACCTTGGGTGTTGGGA
TGAAACGCATAACGAGGGCCCACACTGAAAACTAGCATTTAAATGATGGT
TCCTCAGCTGACACATAGACAGTAAGATTTGAAATGAGAATACTCTTATA
CGAAGCAAGGCAGATAGGAGCAAGGGCCAGACGCTAGAGATGGGCTTGGG
GTTTCCATGCCAACTCACTTTTGTCCTGAAAAAGAACTTCACAGAAGGAG
TACACAGGACCAGAACTTGTAATAGATACTCCTTTCTGTGTTTTTAAGAA
ACCTTTTAACAAGTAAAGTCCTATTGAAATAGTTTATTAGTAACATGGGA
CAAGCAACAGAAAAGGAAAAGAATTGGATGCCAAAGGAACACACAAACTG
TAGTGATTATCGTCAGAAAAGTGCCTGGAATAGTTATTGGAGGAAAATAT
CTTCATGACTGAGCCACAGCTGATTTCCCAAGTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGCACTAAAACAAAATGTACA
AAGATGAGAAGCTGAGACTTGCCAGGCCAAGGATCGCTACGAACCCGGGC
TGCTTCAGTTAGCCAAGAGAACAAAACCCGAGTGAGTACTTAAAGCTTCC
TCACATCTCCTTCTACAGTGCTGGACTGCAGCCCAGGGCCTCGCTCACAC
TTGACAAGCCCAGGAATCAACCTTCTAGTAGAAGGCTACAAAAAAAGGTT
AACAAGCCCAGCCCAAATAGAAGCTTTCTTTTCAGTTCAGAATTATGAAG
GCAACTCTGGTCTTATTGTTACCCCCCCGCCCAAAAGAATCTATTTCAGT
TTCTTATTCTTGTAATCTATTAAAATATTACTAAGCTGCAACTTTCTTGT
TCTCACTTTATAACTCAATTTCTTCAAAGGAGGAAAAACAGTAAAGAAAA
CAAAACCAGTAGCTTCAGGTAACTGTCAAAACCAACGGAAAATCAAAAGC
CCTTTTAACAAAAGAAAATGACACCTTGATGTATAATCTGTGGCTCTTAC
TTGCTTTTCCTGGCATGGCAGATGTATTAGTTTTTGAAACAAAAGCTTTT
GTGGCTGATGATGTAGAGGGCTGCTCGGTGACAACTGGATCTACAGCTAC
ACGGTTGCTCCTAGTTCGAACCACAGAACTGGATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_m21.b1 MSMg01no279_m21.b1 CHROMAT_FILE:
MSMg01no279_m21.b1 PHD_FILE: MSMg01no279_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:30 2005
         (686 letters)



>mm_chr9_82874921_82876006
          Length = 1086

 Score = 1205 bits (623), Expect = 0.0
 Identities = 656/667 (98%)
 Strand = Plus / Minus

                                                                       
Query: 20  ataatggagatgtatagatagccattgatccatatctcttgcaggccatgcaataccctg 79
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||
Sbjct: 886 ataatggagatgtatagatagccattgattcatatctcttgcaggccatgcaataaattg 827

                                                                       
Query: 80  agttatggctgctaaataaagtccaattttaataattgatcacttatggagatgggccag 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 agttatggctgctaaataaagtccaattttaataattgatcacttatggagatgggccag 767

                                                                       
Query: 140 atcatcgacgaaacctttgctttccaggtatagcccttagggggtgatgctgccacctca 199
           | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 766 accatcgacgaaacctttgctttccaggtatagcccttagagggtgatgctgccacctca 707

                                                                       
Query: 200 ggttcactctcagtctcaggaccacccgtgctgatctgtgcaccttgggtgttgggatga 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ggttcactctcagtctcaggaccacccgtgctgatctgtgcaccttgggtgttgggatga 647

                                                                       
Query: 260 aacgcataacgagggcccacactgaaaactagcatttaaatgatggttcctcagctgaca 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aacgcataacgagggcccacactgaaaactagcatttaaatgatggttcctcagctgaca 587

                                                                       
Query: 320 catagacagtaagatttgaaatgagaatactcttatacgaagcaaggcagataggagcaa 379
           || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 586 cacagacagtaagatttgaaatgagaatactcttatatgaagcaaggcagataggagcaa 527

                                                                       
Query: 380 gggccagacgctagagatgggcttggggtttccatgccaactcacttttgtcctgaaaaa 439
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 526 gggccagatgctagagatgggcttggggtttccatgccaactcacttttgtccggaaaaa 467

                                                                       
Query: 440 gaacttcacagaaggagtacacaggaccagaacttgtaatagatactcctttctgtgttt 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gaacttcacagaaggagtacacaggaccagaacttgtaatagatactcctttctgtgttt 407

                                                                       
Query: 500 ttaagaaaccttttaacaagtaaagtcctattgaaatagtttattagtaacatgggacaa 559
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttaagaaaccctttaacaagtaaagtcctattgaaatagtttattagtaacatgggacaa 347

                                                                       
Query: 560 gcaacagaaaaggaaaagaattggatgccaaaggaacacacaaactgtagtgattatcgt 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gcaacagaaaaggaaaagaattggatgccaaaggaacacacaaactgtagtgattatcgt 287

                                                                       
Query: 620 cagaaaagtgcctggaatagttattggaggaaaatatcttcatgactgagccacagctga 679
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cagaaaagtgcctggaatagttattggaggaaaatatcttcatgactgagccacagctga 227

                  
Query: 680 tttccca 686
           |||||||
Sbjct: 226 tttccca 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no279_m21.g1 MSMg01no279_m21.g1 CHROMAT_FILE:
MSMg01no279_m21.g1 PHD_FILE: MSMg01no279_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:30 2005
         (354 letters)



>mm_chr9_82769198_82769951
          Length = 754

 Score =  677 bits (350), Expect = 0.0
 Identities = 353/354 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagaatctatttcagtttcttattcttgtaatctattaaaatattactaagctgcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aaaagaatctatttcagtttcttattcttgtaatctattaaaatattcctaagctgcaac 260

                                                                       
Query: 61  tttcttgttctcactttataactcaatttcttcaaaggaggaaaaacagtaaagaaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcttgttctcactttataactcaatttcttcaaaggaggaaaaacagtaaagaaaaca 320

                                                                       
Query: 121 aaaccagtagcttcaggtaactgtcaaaaccaacggaaaatcaaaagcccttttaacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaccagtagcttcaggtaactgtcaaaaccaacggaaaatcaaaagcccttttaacaaa 380

                                                                       
Query: 181 agaaaatgacaccttgatgtataatctgtggctcttacttgcttttcctggcatggcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaatgacaccttgatgtataatctgtggctcttacttgcttttcctggcatggcaga 440

                                                                       
Query: 241 tgtattagtttttgaaacaaaagcttttgtggctgatgatgtagagggctgctcggtgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtattagtttttgaaacaaaagcttttgtggctgatgatgtagagggctgctcggtgac 500

                                                                 
Query: 301 aactggatctacagctacacggttgctcctagttcgaaccacagaactggattc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactggatctacagctacacggttgctcctagttcgaaccacagaactggattc 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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