BAC Information

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BAC

Clone NameMSMg01-280D05
Chromosome9 (Build37)
Map Location 66,894,021 - 66,894,397
singlet/doubletsinglet
Overlap geneTpm1
Upstream genePpib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb
Downstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280D05.T7 (MSMg01no280_d05.b1)MSMg01-280D05.TJ (MSMg01no280_d05.g1)
ACCAG417354AG417355
length766767
length of high quality
(start - end)
326 (46 - 371)377 (391 - 767)
definitionCHROMAT_FILE: MSMg01no280_d05.b1 PHD_FILE: MSMg01no280_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:59 2005CHROMAT_FILE: MSMg01no280_d05.g1 PHD_FILE: MSMg01no280_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTAAAGCTGTCCCTTGACGTCCATACATGGACATGGTGTGTGTG
TGTGTGTGTGTGTGTGTGCGCGCGCCCCACACATAAAGCTCAAGTGTACA
ATAAATTAAAACAAAACAAAAAATCCTTCTTCCAGTCTTTAGCTCTTTCT
AGCTCCCACATAAAGAACAATGCCTAACATTCAGTAGGCATTCAGTAAGT
GTTTCCTAAAACTAACATTCAAAAATGTTATGGCACTTGGGAGGCTGAGG
CAGGTGAACCTCTGAGTTCAAGGCCAGTCTGGTCTACATGATGAGTTCCT
GGAGAGCCAGGGCTATATGTTTAGAGACCCCGCCTCACAAACAAACAAAC
AAACAAACAAACAAATATTAACAACCCGAAAAGAAAACAAGAAAAGAAAG
GAAAGAACCCAAGTCCCCTGGAAGAGTGTGTGCTCTTAACTAGTGAGCCA
CATCACAGAAATAATACCCACTAATAGGAGTGGCAAGGAGGACTGGATGG
TGAGAAGTGAGACTTCAGATTTGTAAGTTCTTCTGAGTACTTACATATCA
TGAAGACATCATCCAGCACTGATGTGTGTGTGTGCTTCACAATGGATAGA
CAGTGGACCTGTGAAATGTGTTTGAACTTCCTTAACCTCCATCAAATGTG
GCTTGAGACAGTCTCCTTTCTTTTATGCTTTAAAGATATTAACATCTATC
TTCACTACATTTTAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGGAAACTGATAACAATTCCA
AGAATGTGTGAGCAGCACAGAAAGCTACACCCAGAGGCTAGACCCCCAAG
TTCAACCGCAGTTTGTAATTTTTGGTCGGTTTATCTATTTCTGTTTGTTT
ATCTATTTATTTATTTTGGAGAATGTGTAATGCAGATTACCCAAGGATTT
TGAAATCTGAACAAGCCTTTGTATCATGAAAGGCTAGAGATTTATCTAGT
GTTCTTGGTAGTGGTCCACCAGACAACCAACACTGGGATCAGACAAAAAG
AAAAATTTTAGTTTTCTGGATAGTTTTTCTTGCCCCACACACTGGTTTAG
CTAAAACTCATGCTAAAACCTACCTGGTAAAAAAGAACAAAAAAAAGCCT
TCACAACTCTGAGCCTGTTTTGTATAATGTGGGTCAGATGTCTCCTTTGT
ATGTGCTCCATGGAGGATGCCCAGTCACCCCCAAAATCTCCTGCAGGACG
TTTATTTAGGTTTTTCAAAAGAGCCGCTGATAGATCAAGGAGAGATATTC
CATATAAGGAAAGGAATTCAGAGAATTTGCAAATAGCCCAAGTACCAATG
GAAGCAGGAGGGGGAAAAAACACTACTATAATTCTTAAGGGGGAGAGATA
ATAATTGCTGTAACTATGTAGTGGTAATCATGTCTTTAATAAGAAATGGG
GGGGGAGCACTGGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_d05.g1 MSMg01no280_d05.g1 CHROMAT_FILE:
MSMg01no280_d05.g1 PHD_FILE: MSMg01no280_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:59 2005
         (377 letters)



>mm_chr9_66893821_66894597
          Length = 777

 Score =  694 bits (359), Expect = 0.0
 Identities = 373/379 (98%), Gaps = 4/379 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggtttagctaaaactcatgctaaaacctacctggtaaaaaagaacaaaaaaaagcct 60
           |||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||
Sbjct: 577 actggtttagctaaaactcatgctaaaacctacctggtaaaaa--aacaacaaaaagcct 520

                                                                       
Query: 61  tcacaactctgagcctgttttgtataatgtgggtcagatgtctcctttgtatgtgctcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tcacaactctgagcctgttttgtataatgtgggtcagatgtctcctttgtatgtgctcca 460

                                                                       
Query: 121 tggaggatgcccagtcacccccaaaatctcctgcaggacgtttatttaggtttttcaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tggaggatgcccagtcacccccaaaatctcctgcaggacgtttatttaggtttttcaaaa 400

                                                                       
Query: 181 gagccgctgatagatcaaggagagatattccatataaggaaaggaattcagagaatttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gagccgctgatagatcaaggagagatattccatataaggaaaggaattcagagaatttgc 340

                                                                       
Query: 241 aaatagcccaagtaccaatggaagcaggagggggaaaaaacactactataattcttaagg 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaatagccccagtaccaatggaagcaggagggggaaaaaacactactataattcttaagg 280

                                                                       
Query: 301 gggagagataataattgctgtaactatgtagtggtaatcatgtctttaataagaaat--g 358
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 279 gggagagataataattgctgtaactatgtagtggtaatcatgtctttaataagaaatggg 220

                              
Query: 359 gggggggagcactggaatg 377
           |||||||||||||||||||
Sbjct: 219 gggggggagcactggaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)