Query= MSMg01no280_d21.b1 MSMg01no280_d21.b1 CHROMAT_FILE:
MSMg01no280_d21.b1 PHD_FILE: MSMg01no280_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:02 2005
(320 letters)
>mm_chr9_5278471_5279191
Length = 721
Score = 545 bits (282), Expect = e-159
Identities = 309/318 (97%), Gaps = 1/318 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatttatgccactttctaaaacaacttcataccactgatactcctcacca-ttt 62
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 204 ggaattcatttatgccactttctaaaataacttcataccactgatactcctcaccatttt 263
Query: 63 tttcctgtaaatcctacctgcattttactagttcagatttcatatccctctcattctcat 122
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttcctgtaaatcctaagtgcattttactagttcagatttcatatccctctcattctcat 323
Query: 123 acatgtctcttttttaaaactaaagcaataattttcaatacactaggtaccaaataattc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acatgtctcttttttaaaactaaagcaataattttcaatacactaggtaccaaataattc 383
Query: 183 aagaaagaaccttgatccttgagaaaaatagaagtcctaaaattatcttgagaagatttt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagaaagaaccttgatccttgagaaaaatagaagtcctaaaattatcttgagaagatttt 443
Query: 243 ccaggcacccaacttggagacagaaccacggtatatcctgcagaatcacaggactgaaga 302
|||| |||||||||||||||||||||| |||||| ||| ||||||||||||||||||||
Sbjct: 444 ccagttacccaacttggagacagaaccaaggtatacccttcagaatcacaggactgaaga 503
Query: 303 cacaggtatacacagagc 320
||||||||||||||||||
Sbjct: 504 cacaggtatacacagagc 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space: 221432
Effective search space used: 221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_d21.g1 MSMg01no280_d21.g1 CHROMAT_FILE:
MSMg01no280_d21.g1 PHD_FILE: MSMg01no280_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:02 2005
(607 letters)
>mm_chr9_5401386_5402392
Length = 1007
Score = 1093 bits (565), Expect = 0.0
Identities = 580/585 (99%)
Strand = Plus / Minus
Query: 23 tgtgtgtgtgtgtgtgtgtgtgtgtacccatgtaacatgtgtggatgctcaagcagacca 82
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 805 tgtgtgtgtgtgtgtgtgtgtgtgtaagcatgtaacatgtgtggatgctcaagcagacca 746
Query: 83 aaagaagacataatatcccagggtcttgaaatcatactctggtcctccaggagagaagaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaagaagacataatatcccagggtcttgaaatcatactctggtcctccaggagagaagaa 686
Query: 143 catgcatataacttctaagccaccactctagtaccataggactatatttttagttttgag 202
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catgcctataacttctaagccaccactctagtaccataggactatatttttagttttgag 626
Query: 203 tttgaccagaaattaattctagctaaatgataaaaaaatatttctgctttgtttcttcaa 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttgaccagaaattaattctagctaaatgataaaaaaatatttctgctttgtttcttcaa 566
Query: 263 ttccttctttcttatctactccccactctctgtacttgcctccttcccctttgtcttact 322
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 ttccttctttcttatctactccccactctctgcacttgcctccttcccctttgtcttact 506
Query: 323 gcaggtgggctatagaatgatataatgagtattttgttaattcctaatcagctttaaaaa 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcaggtgggctatagaatgatataatgagtattttgttaattcctaatcagctttaaaaa 446
Query: 383 taaatgaggaactgactaagcctgaattcagttctaatagaaatggaaatttaaatattt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaatgaggaactgactaagcctgaattcagttctaatagaaatggaaatttaaatattt 386
Query: 443 ctgtgtctttcgtgaggtttaatacttctcatgtccataataatgtattttcatttattt 502
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 ctgtgtctttcgtgaggtttaatacttctcatgttcataataatgtattttcatttattt 326
Query: 503 aaaggtaagtgtgactactattatgtcattgattaagtcaagaatgggggaaaccattta 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaggtaagtgtgactactattatgtcattgattaagtcaagaatgggggaaaccattta 266
Query: 563 ccccagatcagtttttgacccgtccatcaggtccagttattcgag 607
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccccagatcagtttttgacccgtccatcaggtccagttattcgag 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
