BAC Information

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BAC

Clone NameMSMg01-280F06
Chromosome9 (Build37)
Map Location 103,661,559 - 103,661,790
singlet/doubletsinglet
Overlap geneTmem108
Upstream geneRyk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, 4932413F04Rik
Downstream geneEG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921, Cpne4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280F06.T7 (MSMg01no280_f06.b1)MSMg01-280F06.TJ (MSMg01no280_f06.g1)
ACCAG417449AG417450
length769751
length of high quality
(start - end)
298 (70 - 367)235 (114 - 348)
definitionCHROMAT_FILE: MSMg01no280_f06.b1 PHD_FILE: MSMg01no280_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:08 2005CHROMAT_FILE: MSMg01no280_f06.g1 PHD_FILE: MSMg01no280_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTAAACCTTCCCAAGAACCAGAGAGCTTTCTCACACTTGAAAAT
GTAGGATAGAAAACATATTTATTAGCCGGGCACACACTTGTAATTCTAGC
ACTCAGAAGACAGGAGGGAGGATGGAGAGTTCAAGGCTAGCCCAAGCTAC
ACATCAGAACCTTGTTTCAAACAAAAACAATAAAATGAATACAAAACATT
CGAAAGTAAGAAAAGACATAAATAATTTTTTATTATAAAAGATATTATGA
AGTATTTGGAAAACACTGGAATATGGGCAAGAGCAATCAAGAAGGCTTAA
ATTATACTATCCCGCCAGTTTGTATGCAATCACTCACACTCTCTGTTCTG
CGCATCTCTCTGGGTTTTGTGTGTGCACTTCCCATGGATGTCTTGTTTCA
CGTACTGCTCTCTCAAACTTTTCTCCTAGCAGCAGGAGCATACTGCTGTG
TCAACAGGACTTTACGACCTGCTATTTAAGTGGCAAATATTTACTCAAGA
GAAGTTCCCAGATGTGAAAAATGCAAGGATTTAGCATAAAGCTTTGGAGA
AGATGTAAATGTTCTCTTCAGGACCAGTATCATAGAAGAACCATTCAGAC
TACATCCCACTCAAGAATGGAAACTTGGAATTTCCTTTCATGCTTCCAGG
TAAATAAATATCCCATGTCATTGCTTTACTTTGTACTTAATGTGCATAGC
TGTCATTTATCTTAAAAAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGTAGGGTGTGCACTGTAAGATAAAGCTGGCTTACACCGCC
ACAGTTTGGCCCCCTGGGTAAGCTCATGTGTTGGTGGAAAGGAGAGCCAG
GGATGACTGAATTCAGCCAGGCTCGGCTGCTTGATGGAGTAGTGATGTTG
TCCAGGCAGAGCTTCTCGTTATCGGCTAGCCTGGCTGGCCTTCAGAGGAC
CATGCTCATGTGACAGAGGCTCCTGCAGAGCGTATGGGTCTCAGGCCGTG
TCAGTTATACCTGTGATGCGCTGTGGAAAAGAAGAGCCCCACTAAGACAA
TTTTTCTTTTGCCCGCCCCCCCCGTCCTTATCTCCTGCCACCTACAGGTT
TCCGTCAAACTAGTTGTACCCTCCCTGCCAGTAGATGGCACTCTTGCCTC
TGGGAATTCCTGAAGAGGCTGGCTATGGAACTATCAGCAGCAGTGTGGAT
TTGGTGTGGGTTTTGATAGGCTGTTATCTCCCATGTAAAAGTGACAATCC
TGACCACGACGACGACGATGGTGATGGTGATGATGATGATGTTCTGAGCA
TGATACTTTTTATATAATATAGGAATAGAGTGGGGTGAGGATTTTCTTTC
TTTCTCTCTCTCCTCTTCCCCCTTCCTTTCCCTCTCCCTCTCCCTTCCCC
CTTTTCCTCTCCTCCTTTCTCTCTTTTCCTTCATCCTTCCTTCTCCTCTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_f06.g1 MSMg01no280_f06.g1 CHROMAT_FILE:
MSMg01no280_f06.g1 PHD_FILE: MSMg01no280_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:08 2005
         (235 letters)



>mm_chr9_103661359_103661990
          Length = 632

 Score =  424 bits (219), Expect = e-123
 Identities = 230/235 (97%), Gaps = 3/235 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggtaagctcatgtgttggtggaaaggagagccagggatgactgaattcagccaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctgggtaagctcatgtgttggtggaaaggagagccagggatgactgaattcagccaggct 373

                                                                       
Query: 61  cggctgcttgatggagtagtgatgttgtccaggcagagcttctcgttatcggctagcctg 120
           | ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctgctgcttgatgg---agtgatgttgtccaggcagagcttctcgttatcggctagcctg 316

                                                                       
Query: 121 gctggccttcagaggaccatgctcatgtgacagaggctcctgcagagcgtatgggtctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gctggccttcagaggaccatgctcatgtgacagaggctcctgcagagcgtatgggtctca 256

                                                                  
Query: 181 ggccgtgtcagttatacctgtgatgcgctgtggaaaagaagagccccactaagac 235
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 255 ggccgtgtcagttatacctgtgatgcactgtggaaaagaagagccccactaagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 632
Length adjustment: 9
Effective length of query: 226
Effective length of database: 623
Effective search space:   140798
Effective search space used:   140798
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)