BAC Information

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BAC

Clone NameMSMg01-280H20
Chromosome9 (Build37)
Map Location 89,794,973 - 89,795,166
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik
Downstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280H20.T7 (MSMg01no280_h20.b1)MSMg01-280H20.TJ (MSMg01no280_h20.g1)
ACCAG417568AG417569
length747752
length of high quality
(start - end)
247 (438 - 684)194 (131 - 324)
definitionCHROMAT_FILE: MSMg01no280_h20.b1 PHD_FILE: MSMg01no280_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:20 2005CHROMAT_FILE: MSMg01no280_h20.g1 PHD_FILE: MSMg01no280_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATGGTCATCTTGGCTACATAAAAGTTTCCACCTCAAAACCAGAC
CACCAATAACAACAACAAATTAGTTCAATATTCACATGAAACTCAAGAAT
AATGAAGACTGAAGTTTGGACACTATGCCCCTCCTTAGAAGTGGGAACAA
AACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAAACGAAAG
GATGGACCATCTAGTGATTGCCATATCCAGGGATCCACCCCATAATCAGC
ATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATCGAAAGGA
CCCAGATGTAGTTTTNCTTTGCCCCGGCCTAGNACACACAGAAGTGGATG
CTCACAGTCAGCTGTTGGATGGATCACAAAAAAAACAATGGAGGAGCTAG
AGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAA
CATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGT
ATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGAC
ACGCAAACTGTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAAAA
TGGGAATGAGTGGGTAGGGAAGTGGGGGGGAGGGTATGGNTATTTTTTTC
TGTNTGTTTTTTGTTTGTTCTTTTTGGTCCTGATTTTCGTTCCGTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGGTAGATGCTGCTGAGATTAA
ATAGGGAGCACAGAAAAAATTTTACCCAATACAAAAAATTAAAAATCCCC
CAAATCTTGGGAAACAAACAGGCATCCAGCTACAAGAGGTCCTGATGGTA
CTGTCAGCCACCGCAGAGAACTTCTCCATGAAGCCTGATCAGTCAAGCTG
CCACACTACAAGCCACAGAAACCACTGAGACTTTGCTGTCCAAAAGCAAA
GTGGCAACACGCCCCGCGGATGAGTATTTTGATTCAAAGAGAGACCAGAT
GAGCTGCAGGTGATTGGTTACCGCCNANNGCCANGCCCAACATTGTTCTG
GGCAGAAGGCACACCGTGCACAAACAAAAAGNGACCTAGAAACTGCCGGG
GCTTCTGGGGAGGACTCACACACGGCTCAGCAGGAATCCAACCGAAGGTG
CAGAGCCGCAATGGATGAGCTTTGAATAGTGTTCAGAAGGCTTTACGTTT
CATCCTACAGGGGAGCTCAGGGGCTATAATCAGAAGCTATTGTTCTTACA
TCTGGAGCGAAGCCAGACCCACAGCGGAAGGGAGGCCGGTGAGAACTCTG
TTTGGACTTGAGAATCTAGCACACAAAGGGATTGTGTGTGTATGGGGGAG
GAGGACACACATTTGGAAGTCAGAGGACAATCCCTGGGAGTTAGTTCTCT
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_h20.g1 MSMg01no280_h20.g1 CHROMAT_FILE:
MSMg01no280_h20.g1 PHD_FILE: MSMg01no280_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:20 2005
         (194 letters)



>mm_chr9_89794773_89795366
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaaaaattaaaaatcccccaaatcttgggaaacaaacaggcatccagctacaagaggt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 acaaaaaattaaaaatcccccaaatcttgggaaacaaacgggcatccagctacaagaggt 260

                                                                       
Query: 61  cctgatggtactgtcagccaccgcagagaacttctccatgaagcctgatcagtcaagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgatggtactgtcagccaccgcagagaacttctccatgaagcctgatcagtcaagctg 320

                                                                       
Query: 121 ccacactacaagccacagaaaccactgagactttgctgtccaaaagcaaagtggcaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacactacaagccacagaaaccactgagactttgctgtccaaaagcaaagtggcaacac 380

                         
Query: 181 gccccgcggatgag 194
           ||||||||||||||
Sbjct: 381 gccccgcggatgag 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)