NAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATC
CGCGGAATTCAGGAGCAGATTACAAAATATGTTAAAATAGGAACTTTTAG
ATCTCTGTTGGATTAGCTGGTAAAGTCAACCCAGGAGAATTAAAAATAAA
GAAATGTAGAAAAGAAAAAAATGGTTTTGAAAAATCATTGCAGTATTCTG
TACTAAGAACAGGGAGGCAGAACTGCCCAAGCTTTAGACCAGAGTGGATG
ATATCTGTTCACTTCTTTCTGTATACTGTGATCTATACAGATAGAAGATG
AACATGGAGACAAAGAGGCAATAGTAGGTTACTGAAGTTTAAACTAGTAT
TTTTGAAAATTAGGTTTTAGATTGTGGAAGGGCATCTTTTGATGTAATAA
TAAAAATATATCATGTTTTGGGGCTGGACAGATGGTTCAGCAGTTAAGAG
AACCGACTGCTCTTCCAGAGGTCCCAGGTTTGGATTCCTAGCACCCATAC
TGACAACTGCAGTAAATGACTTTTCTAATTGCAAGTACCTAACATTCTAC
CCATCTAAAGGAAGTATTTATTAATGCATTGTTTTCTTTTCCTAAATAGA
ATATACATGCTCTGAGACTAGGTACTGTGCCATAGATCTCCATATTTAGG
AAAATCATTTGGCTCATTTTAGATCCATCTTTTANATGAATAAAGTACAT
TAAAACAAATGTATATGACAGGACTGTTATCAGAGAGGCTTCACCCATC

NTATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGATGAACCTGCCTCTG
CCTCTCAAGTATTGGGATTAAAGGTCTGTCCCACACATGGCTAGCTAAAA
CTCTGCCATTTTTAATCCAGACGTCCTGTATTATATTTTGAGTAGATCTG
TGGTAAATCATGTGCTGATGATGGAAAGTGTTCTTTGTTTTTTGTCTTTG
TATTTTTGGTTTTCACTGATTGTTTTTTACATTCTGAATGGTTTCTATAG
AATGTTGATGTGCTATATTATATGTCAGTCTTACTCATTAATACTGGCCT
TAATTTTATCTGTGATGTTNATGAGTTTCCCCCACCCCCCCCGTTCTTGC
TTGATTTTTGTTGTTAACTGTTGCACGACATGTCAAGCTCACTTTATGAA
ATATCTACTGAATATCAAAATAAGTATAGTTTGGTTTTCATTTAAAATGA
AAGTGACATTTTATGGGGGCTTGGGGGGGTTGAGTTCAGTTCACAATACA
GTGATAGACTCTGGTGCTTTAAATATATGCACAGAATATTGACAGGACAT
GAATTCAGAGACTGAAACCTAAGGTTGTAGGGTATAGCTCAGAAGAGCTC
CACTGTACAGTGCACATAGTCCTGGGCTGATCCTCAGCACTTTAATAATA
ATAATATTTCTACTTGTGTTTAGTAATGGAGAATACAGTGGC

Query= MSMg01no288_n21.b1 MSMg01no288_n21.b1 CHROMAT_FILE:
MSMg01no288_n21.b1 PHD_FILE: MSMg01no288_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:03 2005
         (671 letters)



>mm_chr9_72343944_72345014
          Length = 1071

 Score =  984 bits (509), Expect = 0.0
 Identities = 533/541 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttaaaataggaacttttagatctctgttggattagctggtaaagtcaacccaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||
Sbjct: 541 atgttaaaataggaacttttagatctctgttggattagctggtaaaggcaaagaaggaga 482

                                                                       
Query: 61  attaaaaataaagaaatgtagaaaagaaaaaaatggttttgaaaaatcattgcagtattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attaaaaataaagaaatgtagaaaagaaaaaaatggttttgaaaaatcattgcagtattc 422

                                                                       
Query: 121 tgtactaagaacagggaggcagaactgcccaagctttagaccagagtggatgatatctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgtactaagaacagggaggcagaactgcccaagctttagaccagagtggatgatatctgt 362

                                                                       
Query: 181 tcacttctttctgtatactgtgatctatacagatagaagatgaacatggagacaaagagg 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcgcttctttctgtatactgtgatctatacagatagaagatgaacatggagacaaagagg 302

                                                                       
Query: 241 caatagtaggttactgaagtttaaactagtatttttgaaaattaggttttagattgtgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caatagtaggttactgaagtttaaactagtatttttgaaaattaggttttagattgtgga 242

                                                                       
Query: 301 agggcatcttttgatgtaataataaaaatatatcatgttttggggctggacagatggttc 360
           |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 241 agggcatcttttgatgtaatgataaaaatatatcatgttttggggctggagagatggttc 182

                                                                       
Query: 361 agcagttaagagaaccgactgctcttccagaggtcccaggtttggattcctagcacccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agcagttaagagaaccgactgctcttccagaggtcccaggtttggattcctagcacccat 122

                                                                       
Query: 421 actgacaactgcagtaaatgacttttctaattgcaagtacctaacattctacccatctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actgacaactgcagtaaatgacttttctaattgcaagtacctaacattctacccatctaa 62

                                                                       
Query: 481 aggaagtatttattaatgcattgttttcttttcctaaatagaatatacatgctctgagac 540
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 61  aggaagtatttattaatgcattgttttcttttcctaactagaatatacatgctctgagac 2

            
Query: 541 t 541
           |
Sbjct: 1   t 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no288_n21.g1 MSMg01no288_n21.g1 CHROMAT_FILE:
MSMg01no288_n21.g1 PHD_FILE: MSMg01no288_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:03 2005
         (306 letters)



>mm_chr9_72205499_72206204
          Length = 706

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagagatgaacctgcctctgcctctcaagtattgggattaaaggtctgtcccacacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 acagagatgaacctgcctctgcctctcaagtattgggattaaaggtctgtatcacacatg 260

                                                                       
Query: 61  gctagctaaaactctgccatttttaatccagacgtcctgtattatattttgagtagatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctagctaaaactctgccatttttaatccagacgtcctgtattatattttgagtagatct 320

                                                                       
Query: 121 gtggtaaatcatgtgctgatgatggaaagtgttctttgttttttgtctttgtatttttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggtaaatcatgtgctgatgatggaaagtgttctttgttttttgtctttgtatttttgg 380

                                                                       
Query: 181 ttttcactgattgttttttacattctgaatggtttctatagaatgttgatgtgctatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcactgattgttttttacattctgaatggtttctatagaatgttgatgtgctatatt 440

                                                           
Query: 241 atatgtcagtcttactcattaatactggccttaattttatctgtgatg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatgtcagtcttactcattaatactggccttaattttatctgtgatg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)