BAC Information

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BAC

Clone NameMSMg01-289C09
Chromosome9 (Build37)
Map Location 14,550,531 - 14,550,842
singlet/doubletsinglet
Overlap genenone
Upstream geneMtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4
Downstream geneFut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289C09.T7 (MSMg01no289_c09.b1)MSMg01-289C09.TJ (MSMg01no289_c09.g1)
ACCAG418780AG418781
length740739
length of high quality
(start - end)
319 (44 - 362)237 (124 - 360)
definitionCHROMAT_FILE: MSMg01no289_c09.b1 PHD_FILE: MSMg01no289_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:24 2005CHROMAT_FILE: MSMg01no289_c09.g1 PHD_FILE: MSMg01no289_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCAGTGTTCCTTCCACCTCACACTTTCCTCTCGCGGTGAATCGTGTG
CCGTCTGTAAAGCATTAACCCTGGCTTTTCTCTTCTCAGCCCACCACTCC
CCCGTTAGGTTTGCAGTCTCAGTCTACCCAAAACAGACATTACTTATGGT
GGTGGGCAGAGCTATACTGCTGAGAACACAGGAGCATGTAGGGACAAGCC
TGGTGGGAAGCCAATCGTGTGCCCTTGCAAACAAGTCACTGTAAAATGAG
AAAGGAAGTAACAGAGAGGTCAGCTGAGCTGGGCCTGCCCGGTGCCACTC
CACACAGGTTATTCGGTGCCAAACTGGCCAGCACAGACTCCACCCCACCT
GTGGGTCATATCCCCCCCCGCTAGTGCTTATAAATGAGGAGCTATTTTCT
ATCTGATTAATCATTTGTCAAAATAACCTCAGCTTATTTGCATAAAGACT
GGATTTGTTAAGAGACCATGTAGCACAAAGGTCCCTGAGACACAGGCAAG
AGTGACCTAAATGTATACCTTGCCCAACTCAACACCAAGAACTCCTCTCC
TCAGTGTCTGAGAAGTGTAATGTACACGCACACACACACACACACACACA
CGCACATTGGAGCTAAATCCCTCACTCCATCCCCTGGTTTGCTGCCAGTT
TCCTGCTCCTGGGTGTGAAGCCACCAGAGAGCAATTAACT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATCTCCTGTACTTACTAACTGTAAGG
CCTGGGACCAATGATTTGCCCCGCCTCACAGTTCTCATTTATCCAATAAT
TGATGATGATGATGATGATGCCTAGGGCTGAGAGATAGCTTAGTCAGTGA
AGTGCTTATCACTATGCATGAGGACCTTAGTTCAATCCTTATTTAAAAAA
AAAAAAAAAAAAAGCCAAATGTGGAGGTATGTTGCTATAATCCCAGCACT
ACAGAGGCAGAGACAGGTGGTTCCCAGGAGCTTGCTTGCCAGCCAGCCTA
GCCTGCTTGGTCTTGTCTAGGCCACACAGAAAATCAGAACCAATGTGGAT
GGTGCCTGAACACCCCCCCTTGAGGTTGTTCCCTGGGCTCTGCAGAGAGA
GGCTTGGGTGCTAGCATGCGTGCACGCACACACATTCGCCTGCATTTACA
GAATGTAAACACGTGCACAGGGAGAGAAGAAATAATACTTACATTGTAAA
GAATTAAAATATGCCCCTCTCTTCCTGCACCCAGGTGGTCCCAAACGGGC
AGGAAGAGCAGCGGGTTTGGGGCGTGCCGCTGTGCCAGGAGGATTGTGAG
GACTGGTGGCGAGCCTGCCACTCATCTTTGACTTGTAAATCCAACTGGCT
CCATGGCTGGTACTGGAGTGAGGGTGAGTGGATTAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_c09.b1 MSMg01no289_c09.b1 CHROMAT_FILE:
MSMg01no289_c09.b1 PHD_FILE: MSMg01no289_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:24 2005
         (319 letters)



>mm_chr9_14550327_14551046
          Length = 720

 Score =  528 bits (273), Expect = e-154
 Identities = 303/313 (96%), Gaps = 3/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccagtgttccttccacctcacactttcctctcgcggtgaatcgtgtgccgtctg 64
           |||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatccccagtgttcgttccccctcacactttcctctcgcggtgaatcgtgtgccgtctg 264

                                                                       
Query: 65  taaagcattaaccctggcttttctcttctcagcccaccactcccccgttaggtttgcagt 124
           |||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 taaagcatgaagcctggcttttctcttctcggcccaccactcccccgttaggtttgcagt 324

                                                                       
Query: 125 ctc-agtctacccaaaacagacattacttatggtggtgggcagagctatactgctgagaa 183
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctagtctacccaaaacagacattacttatggtggtgggcagagctatactgctgagaa 384

                                                                       
Query: 184 cacaggagcatgtagggacaagcctggtgggaagccaa-tcgtgtgcccttgcaaacaag 242
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 385 cacaggagcatgtagggacaagcctggtgggaagccaagt-gtgtgcccttgcaaacaag 443

                                                                       
Query: 243 tcactgtaaaatgagaaaggaagtaacagagaggtcagctgagctgggcctgcccggtgc 302
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 tcactgtaaaatgagaaaggaagtaacagagaggccagctgagctgggcctgcccggtgc 503

                        
Query: 303 cactccacacagg 315
           |||||||||||||
Sbjct: 504 cactccacacagg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space:   220410
Effective search space used:   220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)