BAC Information

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BAC

Clone NameMSMg01-289J15
Chromosome9 (Build37)
Map Location 106,786,231 - 106,786,467
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp
Downstream geneArmet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289J15.T7 (MSMg01no289_j15.b1)MSMg01-289J15.TJ (MSMg01no289_j15.g1)
ACCAG419109AG419110
length725718
length of high quality
(start - end)
239 (129 - 367)335 (76 - 410)
definitionCHROMAT_FILE: MSMg01no289_j15.b1 PHD_FILE: MSMg01no289_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:57 2005CHROMAT_FILE: MSMg01no289_j15.g1 PHD_FILE: MSMg01no289_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:57 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGC
GGAATTCTCTGCTGTGTCTTTGTGGTTCATTTGGTGGCATCCTGTCTACT
GCTAAAACTAAGTTCTTAGTTTTGCCCGGAATTTTTGTTTTTTTATAAGA
AGAAACTTATGTTTCCCGTGTATGAGATTCTGTCTGCTGTATTCTGTATT
TTTTTATATTTTATTTTATTTTTTTGACTAACTGTATGGAAAATTGTCAG
TAAAGCCTTTGTCAGAGGATGAATTTTTAATCCCGCCAGAGTCCTGGTTT
AATCAGGTTTTTTCGTAAAGAATGTTTGGCTTCACTCAGAGCATGCCGTA
TGTCATGTTTTTGTCTTCTCTGCTTCTAACACCTGTGCTGTGCTGGTCCT
GCGCAGCTCTTTGTGCCACCGGTTGCCCCCACACACTTGTCAAACTTAGC
TGCTGGCCAGCAGGCTTACAAGGCATGGTCCCTGTTTATACTAGCCGAAA
GCTGAGCCCGTTCAGAGGAAAGGCCTGGGCCTAAGACCTGTGCCAACAGC
TACAGGTAGNTTTGTTGTTTTTCACTGCCCTAATTGTGCGCTTTAATTTG
ACCGATGACTGTTGGACAGAGCACCCATTTATAAAACCCTGTTTATCGTA
GGACACATCCTCACATGGTCACACATTGATTTTGTAAATAACAAACAGTT
TCACTATTTATTTTTTTGTTGTTTT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGATCTCAGTGAGAGGGTCTCTGGT
AGAGACCAGCAAGAGAATTTTTTCCCATGAGCAGGTGGCCACGAGAGGGT
TAGTCCAGGAGGACACCAACGGAGCAGGAACAGTCAGGGCAAAACCAAGA
TGGCAGGTAACACCATGTGACTGGGAAGTAGCATAGTCAGGTTAGAACAG
ATGAGAACTCTGCCCAGCTATAGTGCAAGGAGCTATTAATAAACACACCA
AGTCTCTGTGTCATTATTTTAGAGTATGAGCAGGCATTGAAAAGCCCCGA
AGTTTTACACATCAATCCTGACTCCCAATCCCACCATGTCCCAAGTAAAC
AGCTGCGTAGATAGCACACCCTTTTTGTTNNNCTATCCACTGTTGAGTGA
GCACCTACTGAGGTGGCTTATTGGGGGTAGATCAGATGAAAACTGCAGAA
TGGCCTACTACTCTTGCAGCTGAGCTGGGACTGGACAACCTAGTGTTCTT
TGCTGGTTCTCTGGCCTGGTTTTACAATAGCTGAGTTGTCTTCTCCCTGA
ACTATACCCCATGATCGTGAAATGACCTTTGATGCTCTCCACATCATTTT
AATGACTCGTTTCTATTTTACAAAATTATTTTCGATTAAATAACTTGAAT
GTCCCCATTGTATCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_j15.b1 MSMg01no289_j15.b1 CHROMAT_FILE:
MSMg01no289_j15.b1 PHD_FILE: MSMg01no289_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:57 2005
         (239 letters)



>mm_chr9_106785934_106786572
          Length = 639

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatttttgtttttttataagaagaaacttatgtttcccgtgtatgagattctgtctgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gaatttttgtttttttataagaagaaacttatgtttcccgtgtatgagattctgtctgct 475

                                                                       
Query: 61  gtattctgtatttttttatattttattttatttttttgactaactgtatggaaaattgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gtattctgtatttttttatattttattttatttttttgactaactgtatggaaaattgtc 415

                                                                       
Query: 121 agtaaagcctttgtcagaggatgaatttttaatcccgccagagtcctggtttaatcaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agtaaagcctttgtcagaggatgaatttttaatcccgccagagtcctggtttaatcaggt 355

                                                                    
Query: 181 tttttcgtaaagaatgtttggcttcactcagagcatgccgtatgtcatgtttttgtc 237
           ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tttttcgtaaagaatggaaggcttcactcagagcatgccgtatgtcatgtttttgtc 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)