BAC Information

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BAC

Clone NameMSMg01-289P08
Chromosome9 (Build37)
Map Location 6,995,361 - 6,995,647
singlet/doubletsinglet
Overlap geneDync2h1
Upstream geneLOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034
Downstream geneLOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289P08.T7 (MSMg01no289_p08.b1)MSMg01-289P08.TJ (MSMg01no289_p08.g1)
ACCAG419369AG419370
length727732
length of high quality
(start - end)
236 (126 - 361)290 (71 - 360)
definitionCHROMAT_FILE: MSMg01no289_p08.b1 PHD_FILE: MSMg01no289_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:22 2005CHROMAT_FILE: MSMg01no289_p08.g1 PHD_FILE: MSMg01no289_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTATAGGATCATCATTAAGACTTAAGTCATCTATTTGTCTATATAGCA
TCACTACAAGATAGTATTTCTTCATGGATCTGAGGAGATCTGCTCCAGAG
GGGTGTGCCATCACTACTTAGTGATAGCTATATATGTTTAATAATAACAG
AAAAAGCATTTTAATAGCAGGAATCTTTCCTAAAATGAGTCCCTCACAGC
CTTGCTTAATGAGGGCTCACCTGTTGCAGATCATATAATAAACCGTGGCA
GGCCCCTTCAGGATGATCTACTGCTAGTTATTAGCTTGTCCCATTATGGC
TCCTGACTATTTATCATCTTGCCCCCCCCCCGAGAAATCTGTCACTAGGT
TAGTATAGTTTTGCCCCAACGTAGAGAGAGATGCATAGCCTAGGTGGAGT
ACATCTGGACTGTATAGTTTAGGCCACACACTGTATGCCACCCATTCCTG
TTTAAAATGTCACTATGATGTGATGTCTTCTTGTGACTGTTTCTGAGTAA
GCATATAAAGCTAAGCAGCTTCAGGTATAGGCTCTCATCTTAGTGCTCAT
TTGTGCTGTATAAGGGTCATAGCGCAGGAATTTGCTCCGTTCCTCCGCTG
TCCTTGCACTGCAGACGTCTGCAATGTAAAGTTCTAGACTAGCCAGTGCT
CTGGACACTTGGAAGCTGTCCTTTTGT
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAAACCTTGAGACATAAGTGATTTTGTCAC
TTTTTTTTTTTTTATTAGACCTAGGCTACCCACACAGTAAAGAGAAGGTG
TCCACAGCTGGAACCTTAATATCAACAGTTCCTAAGAAGCAGGGGGCATC
ACCATGACCTAATTTCCCACACTACCTTCATCTTCCCTAGCTGATACAGT
CCTAATGGCAGACACTGCTAACACAGTTACCAAGGAATGCAGAAACAAGA
GCTTACTTTCAATTTATAAAGAAAAATGTCAGCACATGATTGCAGTAATT
TTATATTGAATTTTTTTTCTTGCCCCCCTCTTAGACTTGTTCTCTAAACA
AAATTTGTTGTTCAACCCCACCAAATGAGAAATTATGAAAAACAACAGCA
ACAAAAAGACAGCCAACAATTACTGCTGTGGTTTCTTAAATTTGCACAGT
AAGTGTGTTACAGTTAAAGGTCAGGTGCTCCAGGTGGTTTTCTCATCCTA
ACGTCCATTCTGATCTCTTTACTAAAAACAAGTTGCAGAACAATGTCTAA
TGCCTATGATGGACACATGATAGATACTAACATGCAGGTAATAAACAAAG
GACAGGTGTGCTCTCACTTGGACTGCAGTGTGGGTTACAATCTAGTAAAC
ATTGTCACATGTTTTGGCTGTCTGAAGACGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_p08.g1 MSMg01no289_p08.g1 CHROMAT_FILE:
MSMg01no289_p08.g1 PHD_FILE: MSMg01no289_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:23 2005
         (290 letters)



>mm_chr9_6995161_6995847
          Length = 687

 Score =  514 bits (266), Expect = e-150
 Identities = 283/292 (96%), Gaps = 7/292 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaccttgagacataagtgattttgtcacttttttttttttt--attagacctaggcta 58
           ||||||||||||||||||||||||||||||     ||||||||  | |||| ||||||||
Sbjct: 201 aaaaccttgagacataagtgattttgtcac-----ttttttttaaaatagaactaggcta 255

                                                                       
Query: 59  cccacacagtaaagagaaggtgtccacagctggaaccttaatatcaacagttcctaagaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cccacacagtaaagagaaggtgtccacagctggaaccttaatatcaacagttcctaagaa 315

                                                                       
Query: 119 gcagggggcatcaccatgacctaatttcccacactaccttcatcttccctagctgataca 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gcagggggcatcaccatgacctaatttcccacactaccttcatcttccctagctgataca 375

                                                                       
Query: 179 gtcctaatggcagacactgctaacacagttaccaaggaatgcagaaacaagagcttactt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtcctaatggcagacactgctaacacagttaccaaggaatgcagaaacaagagcttactt 435

                                                               
Query: 239 tcaatttataaagaaaaatgtcagcacatgattgcagtaattttatattgaa 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tcaatttataaagaaaaatgtcagcacatgattgcagtaattttatattgaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 687
Length adjustment: 9
Effective length of query: 281
Effective length of database: 678
Effective search space:   190518
Effective search space used:   190518
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)