BAC Information

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BAC

Clone NameMSMg01-290A16
Chromosome9 (Build37)
Map Location 66,438,681 - 66,438,983
singlet/doubletsinglet
Overlap geneUsp3
Upstream genePif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22
Downstream geneCar12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2, LOC100041390, LOC100040253
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290A16.T7 (MSMg01no290_a16.b1)MSMg01-290A16.TJ (MSMg01no290_a16.g1)
ACCAG419431AG419432
length738933
length of high quality
(start - end)		315 (45 - 359)---
definitionCHROMAT_FILE: MSMg01no290_a16.b1 PHD_FILE: MSMg01no290_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:29 2005CHROMAT_FILE: MSMg01no290_a16.g1 PHD_FILE: MSMg01no290_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCAAGAGGGGCTTCATTTAAAATGCTGTCTCTTTTCCCCAAAGTG
GACTCCCTAACTGATGGAGGCAAGACTGACTCACAACAGGATACCTGCCA
CTTGCATAATTTTTTTAGATGCATGTGCACAGTGAAGCCATTTCTAAGTT
TGATATAATTTTACATAGAAAAAAAATTAGGCTTGTATTGATACACCCAT
CTCGGAATCCCTGTAGTTGACTACAGATGAACAAGAAGTGCCCCATTCCT
TGTGAGGTGTAAGCTTTTCCTAGTGAGAGGGTGTGTGTGTGTGTGTGTGT
GTGTGTNTNNTTTTTTTTTTTNNNTTTNTTTTTTTTTTTTNTTTTTNTTT
TTTTTTTTTTTTNTNNNNNNNTTTTTTNNTTTTTTTTTTTTNTNGGGTTN
TTTTTTTTTNTTTTTTNNTTTTTTTTTTNTTTTTTTTTTTTTTTTTTNNT
TNTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTNTNTTTNTT
NTTTTTTTTTTTTNTTTTTTTTTTTTNNTTTTNNNTTTTTTTTTTTTTTT
TTTTTNTTTTTTTTNTTTTTTTNTTTTTNTTTTTTTTTTTNTTTNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTNTTTTTT
TTNTTTTTTTTTTNTTTTNTTTTTTTTTTTTTTTNTTT

NTTTTTCTTCTTTATCCCGCTGGGCGAAAAAAAAAAAACACNNAAAAGGA
GGAAAGGGGAGGGGGTGAGGGAAGGGAGAGTTCCAAAAAGAGAAGGGGAG
NNNNNAGGTGTTNCCAAAAAAGGGGGGGNGNNGGGGGAAGAAGGGGGGGG
GAGTGGGGAAGAAGAAGGTTTGGGCCACAAGAAAGAGGGGGGGGGAGAAG
AGGGAGGGGGGGAGGGGGGAGTGAAGAAGGAGGAGGAGAAGGAGAAGTGG
TAAAGGAGAGAGAGAAAGAATGATGAGAAAAGAAGAAAAGAAGAGAGGTG
AGAAGGAGAGGAGAAGGAGTAGAGGGGAGAAAGAAGATAGTAAGAGAAAA
AGAGAGAAAAGAGAAAGAGATAAAAGGGAAAAGAGAAGGAAGAGAAGAGA
AAAAAGATTTTTTTATGGGGGGGAGGGGGAGGGGGGGGGGGCGAGGAGGG
GGAAAATGAATTTTATAGACAAGAAAAAGAGTGAAGAGGGAGAGAGGGAT
AAAGAGAAGGAGGGGGGGGGGACAAAAGGGAAAAAAAAAAAAAAAGAGGG
TGTGGGGGGGGGGGGGAGAAGGAAAGAGGAAGGGGGGAAAGGAGGAAAGG
AAAGGAGAGAAAGGAAGAAAGGAGGGGGAAAGGAGAGGAGAAAGAGGGGG
GGGAAGAGGATGGAAAGGAGTGATAGAAAGGAAAAAAAGGGAAAAACAAG
AAAAGAGATGGAGGGGGGGAGGGGAGAGGGAAAAAGAAGAGAAAGAAAAT
ATGAAAGAAGGGAATGGAGTGAGGGGGGGAGGTGGAGGGGGAGGGAGGGG
AGAGGGGGGGGTATAGGGAGAGGAGAAGAGGGGGGTAGGAGGAAGAGAGG
GGGAAGAGAAGGGAGGAGAGGAAATAAGAAGAGGAAGGGAGAGAAGAGGA
GAAGAGAGGGAGGGGAGGGGGAGGGGGAGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_a16.b1 MSMg01no290_a16.b1 CHROMAT_FILE:
MSMg01no290_a16.b1 PHD_FILE: MSMg01no290_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:29 2005
         (315 letters)



>mm_chr9_66438477_66439186
          Length = 710

 Score =  572 bits (296), Expect = e-168
 Identities = 303/308 (98%), Gaps = 5/308 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcaagaggggcttcatttaaaatgctgtctcttttccccaaagtggactccct 64
           |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcaagaggggcttcattt-----gctgtctcttttccccaaagtggactccct 259

                                                                       
Query: 65  aactgatggaggcaagactgactcacaacaggatacctgccacttgcataatttttttag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aactgatggaggcaagactgactcacaacaggatacctgccacttgcataatttttttag 319

                                                                       
Query: 125 atgcatgtgcacagtgaagccatttctaagtttgatataattttacatagaaaaaaaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgcatgtgcacagtgaagccatttctaagtttgatataattttacatagaaaaaaaatt 379

                                                                       
Query: 185 aggcttgtattgatacacccatctcggaatccctgtagttgactacagatgaacaagaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggcttgtattgatacacccatctcggaatccctgtagttgactacagatgaacaagaag 439

                                                                       
Query: 245 tgccccattccttgtgaggtgtaagcttttcctagtgagagggtgtgtgtgtgtgtgtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgccccattccttgtgaggtgtaagcttttcctagtgagagggtgtgtgtgtgtgtgtgt 499

                   
Query: 305 gtgtgtgt 312
           ||||||||
Sbjct: 500 gtgtgtgt 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 710
Length adjustment: 9
Effective length of query: 306
Effective length of database: 701
Effective search space:   214506
Effective search space used:   214506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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