BAC Information

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BAC

Clone NameMSMg01-290L21
Chromosome9 (Build37)
Map Location 75,115,009 - 75,293,597
singlet/doubletdoublet
Overlap geneMyo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1
Upstream geneNr1h2-ps, LOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501
Downstream geneEG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290L21.T7 (MSMg01no290_l21.b1)MSMg01-290L21.TJ (MSMg01no290_l21.g1)
ACCAG419938AG419939
length726729
length of high quality
(start - end)		644 (75 - 718)339 (391 - 729)
definitionCHROMAT_FILE: MSMg01no290_l21.b1 PHD_FILE: MSMg01no290_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:22 2005CHROMAT_FILE: MSMg01no290_l21.g1 PHD_FILE: MSMg01no290_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,292,954 - 75,293,597)(75,115,009 - 75,115,347)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATACGCG
GAATTCCCCTTCTCCTTCTCAGACAGCTGCTGTCTGTCATCATCAGAAAT
CTGGGCCCGGTCCTCGTCATCTGTGTTCTGCATTTTCTCCTCGTCATCGT
CAGAGTTCTGCAGCTTATCCTCATCGGACCCTTGCTCCCGCTCCTCGTCG
TCAGAGTTCTGCAGCTTCTCGTCGTCTGACTGGTCACTTTTATCCTCTCC
ATCCCATTTCTCATCATCTGACTGGGCTTTTTCAGACCCTTCTGCCTCTG
AGTGATGGCTCCCTTCGTCCGACCTGTGGCCCTCATCGTCGTCATCATTG
TGGGCTTCAGAGCCACTGTGCTGGTCCTCGTCAGAGGGCTCATTATCCTC
GTGGTCAGAGCGCTCGGAAGCCTCCGACCTATTGTCTGACCGTTCAGAGT
GATTGTCACTGCCACTGTGATGAGAGGCCCCCTCCTCCTCACTGTCGTCC
CCGAACAGTTCCTTGTTACTGGGCTGTCCAGAGTCACCTCTGTCATCCTG
ATCACTTTCGCTGCCAGAGGCGTTGCTGCCAGAAGCGCCGTTGTCCTGGT
CAGAGTCCGAGTCGGACTCAGACTCGGAATCTGTGGGATCGTGTNAACAC
AAAGGAATATCAGCACAGCAAGGAGCTCTAGAAGTCCGTCTCAATTTGCT
AAAAGACAAACAGAAACTGGCAAAGC

CACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGCTTAGTGCATCTAAAGCCCT
GGGAGTGATCCCATATCCTACAATGAACCCAAGGGGAGAGAAGAAACAGG
CTTGTGCCTGATGCTTGTGCTCTGGCCTTTGGGGTAACGGGCCTCTCTCT
CTCTCTGCGCAGGTGGAGTACCAATGTGAAGGGTTCCTGGAGAAGAACAG
AGACACTGTCTATGACATGCTGGTGGAGATCCTCAGAGCAAGCAAGGTCA
GCAGGGTCCCCAGGGAGGGGTACAGGCTGCTGCTCATTGTGTAGCTCACA
CAAGGAAGGGTAGAGTTGGATATTTGGGGAGCTACCGAGTAACAGCAGCA
CCTCCAAGTGGTGTTTTCATTTCCTTCTTTTTCCCAGTTGAATAAAATTC
CAGTATATCCATGCACTACATTTTATTTGTTTTAGAACTGAGGGTAAAGT
CCGTGTTAGCATCTGAAAACACTGTTCAGTTGTACACACGCAGCTGACAG
AAAGGGGACAGCTAACGCAGCCAGCCGGCCGGGAAAGCGCAGTTCACAGT
TGGCTCCTTCGCTGACTCACAGGAGTATGGGACTAGCTGTGGGTCAGTCC
CTCACTTCTGGGGACACAGCAGTGACCACACCTGATGAACAAGTCTTCCC
AGGGGCACCCAAATTTTAGTGACAGGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_l21.b1 MSMg01no290_l21.b1 CHROMAT_FILE:
MSMg01no290_l21.b1 PHD_FILE: MSMg01no290_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:22 2005
         (644 letters)



>mm_chr9_75292754_75293797
          Length = 1044

 Score = 1178 bits (609), Expect = 0.0
 Identities = 635/644 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctgctgtctgtcatcatcagaaatctgggcccggtcctcgtcatctgtgttctgcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 agctgctgtctgtcatcatcagaaatctgggcccggtcctcgtcatctgtgttctgcatt 785

                                                                       
Query: 61  ttctcctcgtcatcgtcagagttctgcagcttatcctcatcggacccttgctcccgctcc 120
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 784 ttctcctcgtcgtcgtcagagttctgcagcttatcctcatcggacccttgctcccgatcc 725

                                                                       
Query: 121 tcgtcgtcagagttctgcagcttctcgtcgtctgactggtcacttttatcctctccatcc 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 724 tcgtcgtcagagttctgcagcttctcgtcatctgactggtcacttttatcctctccatcc 665

                                                                       
Query: 181 catttctcatcatctgactgggctttttcagacccttctgcctctgagtgatggctccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 664 catttctcatcatctgactgggctttttcagacccttctgcctctgagtgacggctccct 605

                                                                       
Query: 241 tcgtccgacctgtggccctcatcgtcgtcatcattgtgggcttcagagccactgtgctgg 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 604 tcgtccgacctgtggccctcatcgtcgtcatcgttgtgggcttcagagccactgtgctgg 545

                                                                       
Query: 301 tcctcgtcagagggctcattatcctcgtggtcagagcgctcggaagcctccgacctattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcctcgtcagagggctcattatcctcgtggtcagagcgctcggaagcctccgacctattg 485

                                                                       
Query: 361 tctgaccgttcagagtgattgtcactgccactgtgatgagaggccccctcctcctcactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tctgaccgttcagagtgattgtcactgccactgtgatgagaggccccctcctcctcactg 425

                                                                       
Query: 421 tcgtccccgaacagttccttgttactgggctgtccagagtcacctctgtcatcctgatca 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 424 tcgtccccgaacagttccttgttactgggctgtccggagtcacctctgtcatcctgatca 365

                                                                       
Query: 481 ctttcgctgccagaggcgttgctgccagaagcgccgttgtcctggtcagagtccgagtcg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctttcgctgccagaggcgttgctgccagaagcgccgttgtcctggtcagagtccgagtcg 305

                                                                       
Query: 541 gactcagactcggaatctgtgggatcgtgtnaacacaaaggaatatcagcacagcaagga 600
           |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct: 304 gactcagactcggaatctgtgggatcgtgtaaacacaaaggaatatcagcagagcgagga 245

                                                       
Query: 601 gctctagaagtccgtctcaatttgctaaaagacaaacagaaact 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gctctagaagtccgtctcaatttgctaaaagacaaacagaaact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no290_l21.g1 MSMg01no290_l21.g1 CHROMAT_FILE:
MSMg01no290_l21.g1 PHD_FILE: MSMg01no290_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:22 2005
         (339 letters)



>mm_chr9_75114809_75115547
          Length = 739

 Score =  648 bits (335), Expect = 0.0
 Identities = 338/339 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagcagcacctccaagtggtgttttcatttccttctttttcccagttgaataaaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagcagcacctccaagtggtgttttcatttccttctttttcccagttgaataaaattc 260

                                                                       
Query: 61  cagtatatccatgcactacattttatttgttttagaactgagggtaaagtccgtgttagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtatatccatgcactacattttatttgttttagaactgagggtaaagtccgtgttagc 320

                                                                       
Query: 121 atctgaaaacactgttcagttgtacacacgcagctgacagaaaggggacagctaacgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctgaaaacactgttcagttgtacacacgcagctgacagaaaggggacagctaacgcag 380

                                                                       
Query: 181 ccagccggccgggaaagcgcagttcacagttggctccttcgctgactcacaggagtatgg 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagccggccaggaaagcgcagttcacagttggctccttcgctgactcacaggagtatgg 440

                                                                       
Query: 241 gactagctgtgggtcagtccctcacttctggggacacagcagtgaccacacctgatgaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactagctgtgggtcagtccctcacttctggggacacagcagtgaccacacctgatgaac 500

                                                  
Query: 301 aagtcttcccaggggcacccaaattttagtgacaggcat 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtcttcccaggggcacccaaattttagtgacaggcat 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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