BAC Information

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BAC

Clone NameMSMg01-291C20
Chromosome9 (Build37)
Map Location 32,895,759 - 32,896,053
singlet/doubletsinglet
Overlap genenone
Upstream geneGrit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291C20.T7 (MSMg01no291_c20.b1)MSMg01-291C20.TJ (MSMg01no291_c20.g1)
ACCAG420250AG420251
length757757
length of high quality
(start - end)
326 (428 - 753)293 (68 - 360)
definitionCHROMAT_FILE: MSMg01no291_c20.b1 PHD_FILE: MSMg01no291_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:54 2005CHROMAT_FILE: MSMg01no291_c20.g1 PHD_FILE: MSMg01no291_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
AACCAAGGAATAGCGAATGACTGAGAAGCACCTAGAGAAATGTTTAACAT
CCTTAGTCATCTGGCCAATGCAAATCAAAACAACCTTGAGATTCTATCTC
ACACCTTTGATCTTGATCAATGGCTAAGATCAAAAACTCAGGTGACAGCA
GGTGCTGGCTAGGATGTGGAGAAAGAGGAATACTCCTCCACTGTTGGTGG
GATTGCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGCGGTATATCAG
AAAATTGGACATAGTACTACCTGAGGACCCAGCTATACCACTCCTGGGCA
TATTCTATTATGATGCCCCCCCTCGTGATAAGGACACATGCTCCACTGTG
TTAATACCACCCTTAATTATAATAACAAGAAGCTGGAAAGTACCCAGATG
TTCTTCAACAGTGGAATGGATACAGATAATGTGATACATTTACACAATGG
GGTACTACTCGGCTATTAAAAATGAATTCATGAAATTCTTAGGCAAATGG
ATAGAACTAGAAAATACCATCCTGAGTGAGGTATCCCAATCGCAAAAGAA
CACACATGGTATGCATTTATTGATAAGTGAATATTTGCCCCAAATCTCGG
AATACCCAAGATACAATTTATAGACCACATGAAGCTCAAGATGGAAGACC
AAATTGTAGGTGCTTTTGTCCTTCTTAGAAGGGGGAACAGAATACTCACT
GGAGCAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGCTAGAGAAAATTAGTAATTTTAAAAAATAC
TCAAGATATACTAACTGTATTTGATTAGGTTTGTTTATAATTGGAACACA
AAGGCTGAAATTGAAATCAATTATGAAAAGGTCAGTGACATAAACAGTGT
GATACATCAGTTTGGAATATTACACAATTACCAGAAATGATCATTGCAAA
TGTGTTTAGTGAGATGACAATGTGTGTGTGTATATATATATAAACATTAT
TGAGTTCTTAGTGGTAGGTAACAATGTCATTGTAACTTTAGAAATATGTA
TGATTGTGTGTGTGTGCGCACTATATATATATACACATGTATATATACAC
ATATATCCCCACATACATATTATAACTGATACACCCCCACACACATACAC
ACAGAGAAATATACACCCACACCCACACCCAAATATATATATATGGTGGT
ATACACACACAAATTATAGCTGAAACTCCAGGCTCTGACCAGAAACAGAC
AGACAAACAAACAAGCAAGCAGATGTGAGTTCTTGGTAGGTATGTCCACC
TGAGTCAGATAGTGATATTGACCTTTCTTTCTTGTCTATGAAGCCTGCTT
TTCAACTATTGCTTGGTCTGCATCACAGGGCACCCAGCGCTTCCTTCCTT
TATGAGATCTTTCAAGTTTTCCTCTCTTCCTCTCTCACCTCAGGTATTAA
TCCATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_c20.g1 MSMg01no291_c20.g1 CHROMAT_FILE:
MSMg01no291_c20.g1 PHD_FILE: MSMg01no291_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:54 2005
         (293 letters)



>mm_chr9_32895559_32896253
          Length = 695

 Score =  520 bits (269), Expect = e-152
 Identities = 288/295 (97%), Gaps = 2/295 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctagagaaaattagtaattttaaaaaatactcaagatatactaactgtatttgatta 60
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 201 ctgctagagaaaattagtaattttaaaaaatactcaagatacattaactgtatttgatta 260

                                                                       
Query: 61  ggtttgtttataattggaacacaaaggctgaaattgaaatcaattatgaaaaggtcagtg 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtttgtttataattggaaaacaaaggctgaaattgaaatcaattatgaaaaggtcagtg 320

                                                                       
Query: 121 acataaacagtgtgatacatcagtttggaatattacacaattaccagaaatgatcattgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acataaacagtgtgatacatcagtttggaatattacacaattaccagaaatgatcattgc 380

                                                                       
Query: 181 aaatgtgtttagtgagatgacaatgtgtgtgtgt--atatatatataaacattattgagt 238
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 381 aaatgtgtttagtgagatgacaatgtgtgtgtgtgtatatatatataaacattattgagt 440

                                                                  
Query: 239 tcttagtggtaggtaacaatgtcattgtaactttagaaatatgtatgattgtgtg 293
           ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tcttagtggtaagtaacaatgtcattgtaactttagaaatatgtatgattttgtg 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 695
Length adjustment: 9
Effective length of query: 284
Effective length of database: 686
Effective search space:   194824
Effective search space used:   194824
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)