BAC Information

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BAC

Clone NameMSMg01-291E18
Chromosome9 (Build37)
Map Location 88,256,039 - 88,256,258
singlet/doubletsinglet
Overlap geneNt5e
Upstream geneLOC671706, Tbx18, LOC671731, LOC100039580, LOC384962, EG272633
Downstream geneSnx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291E18.T7 (MSMg01no291_e18.b1)MSMg01-291E18.TJ (MSMg01no291_e18.g1)
ACCAG420334AG420335
length747749
length of high quality
(start - end)
220 (429 - 648)285 (69 - 353)
definitionCHROMAT_FILE: MSMg01no291_e18.b1 PHD_FILE: MSMg01no291_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:03 2005CHROMAT_FILE: MSMg01no291_e18.g1 PHD_FILE: MSMg01no291_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGCACGTAAGACCTCCAACCAGCAGAGCTAAGGCAGCACAAGCTTCCAG
CCTGTGAGAATTTCGTCCTAGGGGCCCGGGGCCCATGAGTTCTCAGGAGT
TGACCAACTTCCCTTATAACAACTCTACTTGGGATTGGATCCCAACTTCA
GAGCTGGGCTTTTCAATAGACTCGTTTCATCTTGGAAAGCAACCATTTGA
AGACTAGCTTCCACGAACTACTGCTGTGTGCGTGCGTGCAAAATGTGGCT
TTGCTCTAAAGGACGCGGTGCTGAAGCTGAGCCGGGCAGAGCCTATGTAA
TTTTGATGAGTTCCCCCCCCCACCGGGATGAGGAAAGTCCTTGTCTGACC
CAAGAAACACCCACAGAGATAACTGAAAAGGCCACTGGTCAGACCTCTGC
CCTTTGGCTGGTTCTCCAGTGTACACAGGAAACCCTGAATGTCACCAGTT
CTTATCAAGTGCCTGGAAACAGTTCCTTGGAGAATGACTCTCTGTCCTGT
GCATGTGACAAATGTTAGGGTTGTTTTGGAAAGGCACGATTATCCAAAGC
CCAGCTTTCTTTTCGTGGGGCTTGTGTATGTATGCGTGCGTGCGTGCGTG
TGTGCTGGGGCAAAGGGTTAGTGGGTCTCAGTGCTTATTTCTGGACGGTC
ACCATATTGTAGACCAGGCTGGTCTCGGACAGTTGCCTGCTTCTGCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAAAGGAAAACAATATGTTTTGTTTATCAGGA
ATAATAAGGAACTGGCCATGGTGGTTCATACCAAGGAGCCATTATTTTAC
AAAGAAATTACACTGTGTTAATTACTTTTCTATTGCAGTGATAAAACACC
ATGACCAATGCAACTTATAGAAGAGTTTATTCTGAGATTATGGTTCCAGA
GGGTTAGAGTCCATGATGGCAGAGCCGAGGCTGTGGGCCTGAAGCAGCTA
GAGCAGCTACTGTGAGCTCACATCTCCAATCACAAGCAGGAAGCAGAGAG
CACTATTTTATGATACGACGCTTTTGAAGCCTCAAAACCCACCCTTGGTG
GGAGACACGCCCTCTCTGACAAGGACACATCCCTTAATCCTTCCCAAATA
GTTCCACCAACTGGAGATCAAGTATTCAAACATATGAACTGGCTGGGCCA
TTCTCATTCAAACCACCACACACAGTAAATATGAGACTTGGCTAGAAAAG
AATTTTCCAACTACAAAGTGGTTAGATATGGGACTAAATGACTGAAGTTT
TGTTTCCCAAAGGTCATTTGGATTTTTCTCTAGATTCTCATTAATATTAT
TATTGAGAGAACCCTGGTGTCTCCTCTTCAGTTGTTAATGACTTGAGATG
ACCAGGCTTTCACAGGCCACCCCAGTGGTCCAGGAACCATCTACACCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_e18.b1 MSMg01no291_e18.b1 CHROMAT_FILE:
MSMg01no291_e18.b1 PHD_FILE: MSMg01no291_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:03 2005
         (220 letters)



>mm_chr9_88255839_88256458
          Length = 620

 Score =  410 bits (212), Expect = e-119
 Identities = 218/220 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggccactggtcagacctctgccctttggctggttctccagtgtacacaggaaaccctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aggccactggtcagacctctgccctttggctggttctccagtgtacacaggaaaccctga 361

                                                                       
Query: 61  atgtcaccagttcttatcaagtgcctggaaacagttccttggagaatgactctctgtcct 120
           ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 360 atgtcaccagttcttatcaagcgcctggaaacagttccttggagagtgactctctgtcct 301

                                                                       
Query: 121 gtgcatgtgacaaatgttagggttgttttggaaaggcacgattatccaaagcccagcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gtgcatgtgacaaatgttagggttgttttggaaaggcacgattatccaaagcccagcttt 241

                                                   
Query: 181 cttttcgtggggcttgtgtatgtatgcgtgcgtgcgtgcg 220
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cttttcgtggggcttgtgtatgtatgcgtgcgtgcgtgcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)