BAC Information

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BAC

Clone NameMSMg01-291G08
Chromosome9 (Build37)
Map Location 119,524,901 - 119,525,130
singlet/doubletsinglet
Overlap geneScn10a
Upstream geneItga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a
Downstream geneScn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291G08.T7 (MSMg01no291_g08.b1)MSMg01-291G08.TJ (MSMg01no291_g08.g1)
ACCAG420404AG420405
length741736
length of high quality
(start - end)
194 (127 - 320)231 (126 - 356)
definitionCHROMAT_FILE: MSMg01no291_g08.b1 PHD_FILE: MSMg01no291_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:10 2005CHROMAT_FILE: MSMg01no291_g08.g1 PHD_FILE: MSMg01no291_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCCGTCCAGTGTGGGTGGTAACAGATGGGGCAGGCTAAATAACT
CCTGCCCTTATAGATTTTTGCCGCAGAAGTTATTCTGGGGGGGACCTTAT
AGATCTCCTTAATCAAAAGTAATTTTTCCTACAATATAGTCTGGCTACAC
GTTGCCCTTTCTTATCTCCTCCCAGATTCTCATAACCTTCTCACTCATTC
AAACCCTCGTCTATCTGTCTGTCTCTCAAACAGGCAAATAAAAAAGGAGA
CAAAAAATGAAAATGAAATATATTATGAAACAGGTAAATGCACATGTGCA
GGTGCATGTTCATGCCTCACCCCCACCCACACACGTGCCATACACATATG
TACACATGTGCCTCCCCCACACAAAAAAAAAAATGCCACACGCAGATGCG
CACACGTGCCACACACATATGCACACATGTGCCACACATGCACACACACT
TGTCACACACACATACATACATGGGCACACACACACTTAACTCATAAAAA
CACAAAATTGGAAAAGATATTATGCAAATAAAAGATCAGTAAGATGAAAA
TAATGCCTGAACAAAGCAATATAATTTTTTAGAAAAATCTACAACATACT
GCCGAGTTTGTTTTGCGTTGGTCATCTACCGATGGGCACACGCATTAGTT
CACCTTATATACCGAGTGAGACTCTATTGGAAAACCCCTAT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACAGTAGCTCCATACCTTTGTATCTA
CAGGACAGTTTTTGTATTGCCCCCCACCCACTCCCAGGGATAATGAGAGG
AAGAATCTCCAGTGGCCTGTGGGCTGCTGAAGTGTGGAGAGGCTGGAGAG
AAACATCAAAAGCTTGCTTACTCTAAGGAGTGGCTCAAACACAGGGCTCT
GGTTTCTGCGGGAGCTCAGTGATGGTGTGAGGCCAGCGAAGGCCCTGGAG
CTCAGCTGCTTGCTTCTTATTTCTCTCACTTGAGTCCCACTGGCTGGACT
CAGCTTCTACCTGAATCTCGCCCCCCCCCCGTTGTTCTCACCCACTGATG
TGTGCGCATTTCCCCTCCCCAACAAAAAAAAGTGATATGATGCATATAAA
TGTGTGTGTGAGGCTGTGTGTGTGTGTCCATCTTAAGGAAGCCCAGCACA
CTCTTGCACAGACTCACCCAAACCCAGTTATCTTCATCTTATGGGACTTT
AAAGGTGCCCCTGCCATTCCAGAGCCTGGAACCCCCTGTGGTTCATTCCT
GATCTGATACTTCTGACCAGATTCTAGATAGCAACAAACCGATTCTCATT
ATCGACACCCAACGTGTGCTGAACGCGACAGTTCTCTCCCCCCTGTATAT
GTCCTGACAGTCTGTATTCTCTGGAGTCACCCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_g08.g1 MSMg01no291_g08.g1 CHROMAT_FILE:
MSMg01no291_g08.g1 PHD_FILE: MSMg01no291_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:10 2005
         (231 letters)



>mm_chr9_119524701_119525330
          Length = 630

 Score =  416 bits (215), Expect = e-121
 Identities = 227/233 (97%), Gaps = 5/233 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccactcccagggataatgagaggaagaatctccagtggcctgtgggctgctgaagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccactcccagggataatgagaggaagaatctccagtggcctgtgggctgctgaagtgt 260

                                                                       
Query: 61  ggagaggctggagagaaacatcaaaagcttgcttactctaaggagtggctcaaacacagg 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ggagaggctggagagaaacatcaaaagctcgcttactctaaggagtggctcaaacacagg 320

                                                                       
Query: 121 gctctggtttctgcgggagctcagtgatggtgtgaggccagcgaaggccctggagctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctctggtttctgcgggagctcagtgatggtgtgaggccagcgaaggccctggagctcag 380

                                                                
Query: 181 ctgcttgcttcttattt--ctctcacttgagtcccactggctggactcagctt 231
           ||||||||||||||     ||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcttgcttctta---gcctctcacttgagtcccactggctggactcagctt 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 630
Length adjustment: 9
Effective length of query: 222
Effective length of database: 621
Effective search space:   137862
Effective search space used:   137862
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)