Query= MSMg01no291_k15.b1 MSMg01no291_k15.b1 CHROMAT_FILE:
MSMg01no291_k15.b1 PHD_FILE: MSMg01no291_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:31 2005
(579 letters)
>mm_chr9_64382505_64383483
Length = 979
Score = 948 bits (490), Expect = 0.0
Identities = 546/570 (95%), Gaps = 11/570 (1%)
Strand = Plus / Plus
Query: 4 ggaattcttccttgccctagctctggtttttgaataattttttgaactgaaagtgccaca 63
|||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 204 ggaattcttcctggccctagctctggtttttggataattttctgaactgaaagtgccaca 263
Query: 64 atgggactatgacgccacaggtcttctacccagttctgagaagaggaatattgatagcag 123
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgggactatgatgtcacaggtcttctacccagttctgagaagaggaatattgatagcag 323
Query: 124 caagatgggaaaagggcacagctgtcagctccggctgtcgttgctcttcaggtctctgta 183
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 caagatgggaaaagggcacagctgtcagctctggctgtcgttgctcttcaggtctctgta 383
Query: 184 gtttcagataagtcaggtgaggaagacagcagctaatgagcggagcaggaacccagagat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtttcagataagtcaggtgaggaagacagcagctaatgagcggagcaggaacccagagat 443
Query: 244 gaatacataacactacacaaccacagtgtatcggccaaccagcatatcatgaaaaggagg 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 gaatacataacactacacaaccacagtgtatcggtcaaccagcatatcatgaaaaggagg 503
Query: 304 ccaacgaaaagcatgtattggttcaccttacagtgcattgctgagctctgttcatcatga 363
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 504 ccaacgaaaagcatgtattggttcactttacagtgcattgctgagctctgttcatcatga 563
Query: 364 ctccccccc-----tagaaacttacaaaacacttctggtggtgttctggtgacttcttgc 418
|||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 ctcc-----atagatagaaacttacaaaacacttctggtggtgttctcgtgacttcttgc 618
Query: 419 ctcttcagcagactcagccgattggcagagtgatgtcagctgacacagactcatatgtgg 478
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctcctcagcagactcagctgattggcagagtgatgtcagctgacacagactcatatgtgg 678
Query: 479 agttttgctaagacagactcaggtgccgtgggaagacccttgatgtttggagagagtata 538
||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 679 agttt-gctaagacagactcaggtgccgtgggaagacacttgatgttaggagagagtata 737
Query: 539 aataggacttaacagacagtgatgggaggc 568
||||||||||||||||||||||||||||||
Sbjct: 738 aataggacttaacagacagtgatgggaggc 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no291_k15.g1 MSMg01no291_k15.g1 CHROMAT_FILE:
MSMg01no291_k15.g1 PHD_FILE: MSMg01no291_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:31 2005
(320 letters)
>mm_chr9_64535316_64536035
Length = 720
Score = 611 bits (316), Expect = e-179
Identities = 319/320 (99%)
Strand = Plus / Minus
Query: 1 cttgcaccctctctgttggttgagccaaaggactctccagcttggtggggagtagggtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cttgcaccctctctgttggttgagccaaaggactctccagcttggtggggagtagggtgc 461
Query: 61 aggagctgtgacactagccttcaccccacaactgcactgctctcacaaggcagtcttctc 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aggagctgtgacaccagccttcaccccacaactgcactgctctcacaaggcagtcttctc 401
Query: 121 tttgaagtcctccctgcacccccaaggcagacaaattcacccacagagctgctaatgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tttgaagtcctccctgcacccccaaggcagacaaattcacccacagagctgctaatgtga 341
Query: 181 tccgtctaatgcattaattgcgagacttcttaactgaatcaagagccaggcatgggaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tccgtctaatgcattaattgcgagacttcttaactgaatcaagagccaggcatgggaagg 281
Query: 241 ggaggcggggactggtgaaaagaaaacattgggttatatttaatctatgtttaatgattc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggaggcggggactggtgaaaagaaaacattgggttatatttaatctatgtttaatgattc 221
Query: 301 cggggaagcgctgtccgtaa 320
||||||||||||||||||||
Sbjct: 220 cggggaagcgctgtccgtaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
