BAC Information

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BAC

Clone NameMSMg01-291P12
Chromosome9 (Build37)
Map Location 8,108,952 - 8,109,262
singlet/doubletsinglet
Overlap geneAK129341
Upstream geneDync2h1, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, LOC100039855
Downstream gene1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6, Pgr, 9030420J04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291P12.T7 (MSMg01no291_p12.b1)MSMg01-291P12.TJ (MSMg01no291_p12.g1)
ACCAG420820AG420821
length802751
length of high quality
(start - end)
319 (97 - 415)237 (128 - 364)
definitionCHROMAT_FILE: MSMg01no291_p12.b1 PHD_FILE: MSMg01no291_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:53 2005CHROMAT_FILE: MSMg01no291_p12.g1 PHD_FILE: MSMg01no291_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCTTTTCTNTTTCTGTCTGCTACGCCTTCCTTCTGCCCCANNAAAAT
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCTAATATGTACAGCACTATAGTTCAATATACTGAACAAAACT
ATAATCTGGTTTGGGGAATAAAACCACTCGAAAAAGTTAAGTAACAATAA
AATCACAACCTTCAGGTTATCTCTTCCTAGTCCTCTTTGTCTCAATTTTG
GTTAAAAAAATTAACATTTATAATTGGACTCCTATCTTCTGATTAAAAAA
GGTTTAAGTAAAAAAATTTAAAATATTAACATATTCTCCTTTTCAGTGAA
GTTCTTTGTAAAAACCTTGCAAATAAACATTACACGTCAAAATTAATCAA
ACAAAGCCTATACTTTTATATGAACCCCCCCCCCCCCAGAATTGCTATTT
GAAATAGAAATTGTGAAGCTCCACATTAAAATAATATATTTTTAGCGTTG
AATGATTTTACACACATATCCACCACAAAGCCAGAACTTTAATGATGAAA
TTAGCACTAGAAAACAACTAGTTTTATGATATCCTTTCCATAACTCACAT
CCATCCCTGCATTTACTTCTTTCTAATCATCGTATTATATTTAGTTGTTT
TCTTTTCTTGTTATACTGCACCCACGGTATACTTGCTTACATACATGCAT
TATTGGCTACAGACACTTCTGAGAGAGGACATGTCGTCTATTTCTTTCTT
TTCCCGTTTTTTTAACTACGCATTTTCTCCATTTACATTTCCAATGCTAC
CC
CGATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTAGAATCTTGTCAGTTGAAGTC
TGATGCTATGCCTCACCTTTAACCCCCAAACCCAAGCATTCTTATCCTTG
GGAGTAAAATTACTTGTCTCCCTTTTGTTGCTGTGATAAAATATGCTTGC
AACAACATTTAAAGGGAGGGAAGGTTTACTTCACTGTTCAAAAATCCATT
CTGGTTAGGGAAATGAAGGTAGCAGGAGTTAGAAGCCTGACATCACATCA
CCAATCAGAAAACAGACAATCGGGACTTCGTGTGCTCACTGGCTTTCTCC
ATTTTGTACAGTCTTTTATTCCATGCCCAACCAATATCCCACCCACAATT
AAGATGTCTTCCCAAACCCCCGCAATCAAGACAGTCCTTCACAGACATTC
TCAGAAGCAAACCTTAGGTAATCCTTCACAAGAGCTCTATCAAACTGACA
ATCAACACTAATCATACAGTCCCATCTACAGGCAATCTTCAGTCTATGCC
ACCAATAATAACAAAATCTGCTCAGTTTGCTGACAGGAGCCTGATATAGC
TGTCTCCTGAGAGGCTCTGCCAGTGCCTGGCAAATACAGAAGTGAATGCT
CACCAGCCATCCATTGGACGGAGCACAGGTCCCCCAATGAAGGAGCTTGA
GAAAGTACCCAAGGAGCTGAATGGTTCTTGCAGCCCCATACGAGGAACAA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_p12.b1 MSMg01no291_p12.b1 CHROMAT_FILE:
MSMg01no291_p12.b1 PHD_FILE: MSMg01no291_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:53 2005
         (319 letters)



>mm_chr9_8108746_8109464
          Length = 719

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   attcttctaatatgtacagcactatagttcaatatactgaacaaaactataatctggttt 66
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 207 attcttctaatatgtacagcactatagttcaatatactgaacaaaacgataatctggttt 266

                                                                       
Query: 67  ggggaataaaaccactcgaaaaagttaagtaacaataaaatcacaaccttcaggttatct 126
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggggaataaaactactcgaaaaagttaagtaacaataaaatcacaaccttcaggttatct 326

                                                                       
Query: 127 cttcctagtcctctttgtctcaattttggttaaaaaaattaacatttataattggactcc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cttcctagtcctctttgtctcaattttggttaaaaaaattaacatttataattggactcc 386

                                                                       
Query: 187 tatcttctgattaaaaaaggtttaagtaaaaaaatttaaaatattaacatattctccttt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tatcttctgattaaaaaaggtttaagtaaaaaaatttaaaatattaacatattctccttt 446

                                                                       
Query: 247 tcagtgaagttctttgtaaaaaccttgcaaataaacattacacgtcaaaattaatcaaac 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcagtgaagttctttgtaaaaaccttgcaaataaacattacacgtcaaaattaatcaaac 506

                      
Query: 307 aaagcctatac 317
           |||| ||||||
Sbjct: 507 aaagtctatac 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)