BAC Information

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BAC

Clone NameMSMg01-291P20
Chromosome9 (Build37)
Map Location 5,018,866 - 5,019,169
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4, EG664889
Downstream geneCasp1, Casp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291P20.T7 (MSMg01no291_p20.b1)MSMg01-291P20.TJ (MSMg01no291_p20.g1)
ACCAG420836AG420837
length740739
length of high quality
(start - end)
305 (436 - 740)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no291_p20.b1 PHD_FILE: MSMg01no291_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:55 2005CHROMAT_FILE: MSMg01no291_p20.g1 PHD_FILE: MSMg01no291_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGAAGGAAAATGGTAAGTGAGTTATGAATAATAGTTTAGAACAT
GAAAAACATGGTGTCAATGTTCATACATATCAGATACATGAAATGTGAAA
ACAGGCTTTTGCTGTCAGAATGCTTCGTTATGCAGCAGTAACAAATGACT
GCCAAAGCTTGCAGCAGTCAGCAAAACACATACTCAACTCCCACTCATTC
TAGATGGTCATTTCTGGGCTTTGACTCTGAGACCCAGAATCATAGAATAC
AAGTAACTTAAACCCTTTCGAACTACATGTCCACAGGATAAAAAAACATG
ACTCTTGATGGCTAATGTACTTACCACCCCCCTTTCTTTGGGTAAAGTAA
CTAAAATGGTCAATTCTGGCATTTAGTTTTAAAGTGAACATCATTTACAT
GTGGGTAGAATAATCTTTCCAACATGCCAACAGGCTAGAGGCTTTCCATG
GAAACATTATCAGCCTAAGGGCACTTCTGATGAGGGCACCAACTGTACAC
TAACTTTAGTGTAGCATGTTCTAAAGGTTTTAGACATCTGCCTATGTGAA
AATAAATCTTCAATGGATGTAGCTATAGTGTAGGAGGCAGAGACTAGTAT
CCTGAATGCCAAGAAATTTAGCATTTGAAAAACAAAAGGAAGAGATGACA
AAAAAGATTTTCAAATACATCAAATATAGAAATAGATATN
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGAGCTCTGTTACCCAGTTTTAAT
AGGGTTATTTGATTCTCTGGAGTCTAATTTCTTTGGTTCTTTGTATATAT
TGGATATTAGCCTTGTATAAGATATAGGATTGGTAAATATCTTTTAAAGA
CACATTCTCCACCATGTTCATAGTAACCAGAAGCTGGAAACACCCAGATG
TCCCTAATTTTGGATGCAGAAATTGTGTTACATTTATACAATGGAATACT
ACTCAGCTATTAAAAACAATAACTTCATGAAATTCACAGGCAAATGGATG
GATCTCAAAAATATTTTTTTACTCCCCCACCCCCAACACACATTGTATGT
ACTCACTGATAAATGGATATCAAGCAAAGATGATGGAATATTCACATTAC
AACTCACAGACCACATGAAGCTCAAGAGGAAGGAAGAACAAAGAGTGGAT
GCTTCAGTCCTACTTAAAAGAGGGAACAAAATAATCAAGGGAAGTAGAGG
GTGAAAGGGACTTTGGAGGAAGAGAAGAGGAGGAGGGGAAAAAGTGGGGA
AGAATCAGTTATGGAAGGATATGAAGGAAATGTACAGAGGGCCAGGAAAT
TGAACAGAGGTGTGTAGCAATGGAGGAAGGGGAACTGGGAATAGAAACCA
GAAAGTCCCAGACGTCAGGAATACAAGAGCCTCCAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_p20.b1 MSMg01no291_p20.b1 CHROMAT_FILE:
MSMg01no291_p20.b1 PHD_FILE: MSMg01no291_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:55 2005
         (305 letters)



>mm_chr9_5018666_5019370
          Length = 705

 Score =  557 bits (288), Expect = e-163
 Identities = 300/304 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacatcatttacatgtgggtagaataatctttccaacatgccaacaggctagaggcttt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 504 gaacatcatttacatgtgggtagaataatcttttcaacatgccaacaggctagaggcttt 445

                                                                       
Query: 61  ccatggaaacattatcagcctaagggcacttctgatgagggcaccaactgtacactaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccatggaaacattatcagcctaagggcacttctgatgagggcaccaactgtacactaact 385

                                                                       
Query: 121 ttagtgtagcatgttctaaaggttttagacatctgcctatgtgaaaataaatcttcaatg 180
           | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 taagtgtagcatgttctaaaggttttagacatctgcctatgtgaaaataaatctgcaatg 325

                                                                       
Query: 181 gatgtagctatagtgtaggaggcagagactagtatcctgaatgccaagaaatttagcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatgtagctatagtgtaggaggcagagactagtatcctgaatgccaagaaatttagcatt 265

                                                                       
Query: 241 tgaaaaacaaaaggaagagatgacaaaaaagattttcaaatacatcaaatatagaaatag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 264 tgaaaaacaaaaggaagagatgacaaaaaagattttcaaatacatcaaatatggaaatag 205

               
Query: 301 atat 304
           ||||
Sbjct: 204 atat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)