BAC Information

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BAC

Clone NameMSMg01-292D21
Chromosome9 (Build37)
Map Location 31,934,681 - 31,934,965
singlet/doubletsinglet
Overlap genenone
Upstream geneSt14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622
Downstream geneGrit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292D21.T7 (MSMg01no292_d21.b1)MSMg01-292D21.TJ (MSMg01no292_d21.g1)
ACCAG421014AG421015
length748738
length of high quality
(start - end)		372 (47 - 418)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no292_d21.b1 PHD_FILE: MSMg01no292_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:15 2005CHROMAT_FILE: MSMg01no292_d21.g1 PHD_FILE: MSMg01no292_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTAAAATTATACGAGTAATTATTAGGCTCTTTTATAATAGGACT
GCTATTAAATCCTTTCTGAAGTCACAGCTGTGTTGAGAACTCTGCCAGTC
TTTAAGTGTCACAAGTTAATTGCTTCTGAGATAGTAAGCAGGCAACTGCA
ACTTAGAGCACATTCCAAGAGGTTGTAAAACCATTAACCAATGGTTGTAA
AAAGGGAACTGAGGATTTACTAAAGGTGCAAGGACAGAAGACAAAATATT
GACTGAATTTATCTATACAAAACTTCATTAATAACTTAATGACAAAAGTT
ATGTTTTTTAACTCTCCATGAGCCTGTACAACTGGTGTGCCAGGATTTTT
CCCGTCCAATCAACCCCCCCCCCACCCGCAACAGGAGGCCTGTGATTGGA
GAGGAAAAAGGAGACAGAGCTAAGCATTGCAGAGACAGAGAGCATCTCAG
GAGACAAGGGGAAGCCAAAATGGAGGCAGACGGACAGGAAAAACAATCTG
AACCAGCGTGGCTTTAGATAGCCACAGGTAGCTATGATATCATAAAGGTT
ATAAAAATTGGGATAATTTGGCTAATCTAACTGTTCCCGCTTTATCTTAT
CCACTGCTTTTGACTTATTTTTTTGCACTCTTTTTCTTCTAATTTTTATC
AACGAAATTATTCTTTCTTATCTTTTATCCCCTTCTTTATTTTTTCTG

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATATGTGGTTAACGTAACAAT
GAACCTGATTAAACAGGTAATTAACTGAAGTCTCTCATATTTCTAAACTG
ATGACTTAAAAACAGTACATGATGAAAAAGAGAAAGGAACAAGCCAGTAT
TTTTAAAACAATGTCTGAAAAAGCCTTGGGCTGGAGAGATAGCTCTGTGG
GTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAA
CTACATGGTGGCTTACAACCATCTGTAATGAGATCTGACGCCCTCTTCTG
GTGCATCTGAAGACTTTTATTGTGAACTTACCTATAATAATAAATAAATC
TTAAAAAAAAAACTAATACCCGCCATCAAGCTACCAACTCAAGGAACTTC
TACAAATCTCAAGCTAGAGTTTTTTATTTTTATTTTATTTTATGTGTGTG
GGNGNNTNNNNNTNTNNNNTNNNNNTNNTTTTTTTTNNTTTTTTTTTTTT
NTTTNTTTTTTTTTTTTTTNTTTTTTTNTNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTT
CCTTTTTTNNTTTTTTTTTTTTTTTTTTTTTNTTTNNTTTTTTTTTTTNT
NNNNTNTTTTTTTNTTTTTTTTTTNTTCTTTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_d21.g1 MSMg01no292_d21.g1 CHROMAT_FILE:
MSMg01no292_d21.g1 PHD_FILE: MSMg01no292_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:15 2005
         (287 letters)



>mm_chr9_31934615_31935301
          Length = 687

 Score =  543 bits (281), Expect = e-159
 Identities = 285/287 (99%), Gaps = 2/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatatgtggttaacgtaacaatgaacctgattaaacaggtaattaactgaagtctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 actatatgtggttaacgtaacaatgaacctgattaaacaggtaattaactgaagtctctc 292

                                                                       
Query: 61  atatttctaaactgatgacttaaaaacagtacatgatgaaaaagagaaaggaacaagcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 atatttctaaactgatgacttaaaaacagtacatgatgaaaaagagaaaggaacaagcca 232

                                                                       
Query: 121 gtatttttaaaacaatgtctgaaaaagccttgggctggagagatagctctgtgggtaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gtatttttaaaacaatgtctgaaaaagccttgggctggagagatagctctgtgggtaaga 172

                                                                       
Query: 181 gcactgactgctcttccaaaggtcctgagttcaaatcccagcaactacatggtggcttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gcactgactgctcttccaaaggtcctgagttcaaatcccagcaactacatggtggcttac 112

                                                          
Query: 241 aaccatctgtaatgagatctgacgccctcttctggtgcatctgaaga 287
           |||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 111 aaccatctgtaatgaga--tgacgccctcttctggtgcatctgaaga 67


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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