Query= MSMg01no292_f22.b1 MSMg01no292_f22.b1 CHROMAT_FILE:
MSMg01no292_f22.b1 PHD_FILE: MSMg01no292_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:25 2005
(317 letters)
>mm_chr9_52114587_52115303
Length = 717
Score = 584 bits (302), Expect = e-171
Identities = 314/318 (98%), Gaps = 1/318 (0%)
Strand = Plus / Minus
Query: 1 aggactctgtcacgtggctgtcagccagaagctcaacccggatgtcaactgtacagcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aggactctgtcacgtggctgtcagccagaagctcaacccggatgtcaactgtacagcaac 652
Query: 61 aaccgggcttctccatgtggcctggac-tttgcatctgtgtcccctcaatgaactctctg 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 651 aaccgggcttctccatgtggcctggacttttgcatctgtgtcccctcaatgaactctctg 592
Query: 120 agaggtccaaatggaagtaatgaagttcttatgatctgatagcagaagcgccagaatgac 179
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agaggtccaagtggaagtaatgaagttcttatgatctgatagcagaagcgccagaatgac 532
Query: 180 actcctgctgcagcctcccaactgacaaattactaaggtcaactcagacacagctgcctt 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 actcctgctgcagtctcccaactgacaaattactaaggtcaactcagacacagctgcctt 472
Query: 240 cctcggtgataacagacattggtgaccatctttaatggacatttcattctgttggttttg 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tctcggtgataacagacattggtgaccatctttaatggacatttcattctgttggttttg 412
Query: 300 ctagtctgtagttagtag 317
||||||||||||||||||
Sbjct: 411 ctagtctgtagttagtag 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no292_f22.g1 MSMg01no292_f22.g1 CHROMAT_FILE:
MSMg01no292_f22.g1 PHD_FILE: MSMg01no292_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:25 2005
(287 letters)
>mm_chr9_51913149_51913835
Length = 687
Score = 534 bits (276), Expect = e-156
Identities = 282/284 (99%)
Strand = Plus / Plus
Query: 1 agtggtagacaggaggttgagctaccccagctagatctgcattctccagcaaggagcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggtagacaggaggttgagctaccccagctagatctgcattctccagcaaggagcttc 260
Query: 61 tgccaggtgcactgtgattctcacccccacctacgcaatctcctgcttcgttgctcttgt 120
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tgccaggtgcactgtaattctcacccccacctatgcaatctcctgcttcgttgctcttgt 320
Query: 121 cctgtgtctctcatttaatgtacatctgactcacctggaaggtttgctaagaaacttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgtgtctctcatttaatgtacatctgactcacctggaaggtttgctaagaaacttgct 380
Query: 181 ggaatcctttctcggactttgtggtagagcagacagaccacagccctgcctcaagcatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaatcctttctcggactttgtggtagagcagacagaccacagccctgcctcaagcatct 440
Query: 241 ccattgctatcacattcctgggtgagaccaaggctccttcccta 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccattgctatcacattcctgggtgagaccaaggctccttcccta 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
