BAC Information

Click to search

BAC

Clone NameMSMg01-292O12
Chromosome9 (Build37)
Map Location 72,823,654 - 72,823,947
singlet/doubletsinglet
Overlap genenone
Upstream geneTcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1
Downstream geneEG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292O12.T7 (MSMg01no292_o12.b1)MSMg01-292O12.TJ (MSMg01no292_o12.g1)
ACCAG421498AG421499
length763800
length of high quality
(start - end)
---287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no292_o12.b1 PHD_FILE: MSMg01no292_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:06 2005CHROMAT_FILE: MSMg01no292_o12.g1 PHD_FILE: MSMg01no292_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATGCCTGACATCACAAATCACTAAAACTATCTGCTATTGGCCAATGCAC
AACCCTAATAAAGTAGGATCGAAAGCATACCCAGCTGCTGGGCACAGCCT
GCAGCAGACCCATATCCCACGCCCGCGTATACGAGGAAAACATATTCTCA
TAATATTTCAGTGTTTTCCAAACAAACCAAAATTGACACTATATGCACGA
ACCCATACCTAACCACTTATGACTATAACAAATTTAAATTTGTACTAGTA
CATAATGAGAATGATAACAATAATACATCTTTGTAACCTCACCAATGATA
AAAAAATGAAACATTGTATATATTGACTGACCAACAAAATTGCAGAATTG
AATATATATATTCAAACACCCACACATATATATAATGTGTGTGTATGATT
ACCCTGGTACTAAAATTCATATCGATCATGGGAAAGAAATCTGAGTCCCA
GAGTAATCATCTGACCGAACAAACAAGCGCAGAAATGTTGTCTCACCTCC
TCAATAACCCAAAGATTTAGAGCTACCGAGATGACCCAACAGCTAACAGC
AGTGATTGCTTTCCAGAGAACCCTAGCCCAATTCCCAGCTTTCACATGCG
AATGCAGAGTCACCGTGACTCCCAGATCTAGGTACCTGACACCTTCTTAT
GGCTCCTCGGGCACTGCCTGTATTTTTGGCCCCTACTTCCTGGCGATCAG
GCTTTCTTATATG
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACTGTGTTATCCCAGGTTGACCA
TGAAATTCTGGTCCTTGTGCCTAAGTCTGCAGAGTACTCAGGGTACAAGT
GAACTCCAGCATGCCTAGCTTTGAACACTTTTTAAGATTTATTTTTAAAT
TTTTAATTGTGTGTCTGTGTGTGTATCTGTGGGTACATACTGGTGAGTAG
AGATGCCTCAGAGGCATATGATCCCTGGAAAGCTGGAATTATAGGGGCTG
TGAGTCCCTTCCCCTTTTCCCATGGTGCTCAGGACAAAACAAGAACAGTC
TGCGCTCTTAACTGCTTTTCCACCTCTCCTCCCCCTGAACATGTGTTTAT
ATGGTAGGGTCCAGCCCCCCCCTTTTTTAAAAAAAAAATGGTTCTAGAGT
TTGTAGAGACATCTATTCTACGTGGTTTATTTTTTTTTGACCCTTCTATC
TTTTTTATCCGTTTGTGCTCCCACGGCTCTTATATTTTCAGGTCAATTTT
TTTTGTTTTACCACCTATCTTTTATCTTTTTTTATTTTTGATCTTATTAT
TTTTTTTTTTCTCTTTTTCCCCCCCCTTATTTCCCACTTTACTTTTTCTT
TTATTTCCTATCCCCCCTCTTTTTAACCCACCTATTTACTGTTCTCTTCA
CTACCTCTCTTCCTTTCTTCTTTTTCTTTACCTCCTTATTCCTTTCTTAA
CCAGCCATCTGTCCGCCGTTATCTTCTATTGTTGCACACCCTTTATTTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_o12.g1 MSMg01no292_o12.g1 CHROMAT_FILE:
MSMg01no292_o12.g1 PHD_FILE: MSMg01no292_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:07 2005
         (287 letters)



>mm_chr9_72823454_72824140
          Length = 687

 Score =  499 bits (258), Expect = e-146
 Identities = 282/294 (95%), Gaps = 7/294 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgtgttatcccaggttgaccatgaaattctggtccttgtgcctaagtctgcagagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 tactgtgttatcccaggttgaccatgaaattctggtccttgtgcctaagtctgcagagtc 260

                                                                       
Query: 61  ctcagggtacaagtgaactccagcatgcctagctttgaacactttttaagatttattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagggtacaagtgaactccagcatgcctagctttgaacactttttaagatttattttt 320

                                                                       
Query: 121 aaatttttaattgtgtgtctgtgtgtgtatctgtgggtacatactggtgagtagagatgc 180
           |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 321 aaatttttaattgtgtgtctgtgtgtgtatctgtgggtacttactggtgagtggagatgc 380

                                                                       
Query: 181 ctcagaggc-------atatgatccctggaaagctggaattataggggctgtgagtccct 233
           |||||||||       ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 ctcagaggccagaggcatatgatccctgggaagctggaattataggggctgtgagtccct 440

                                                                 
Query: 234 tccccttttcccatggtgctcaggacaaaacaagaacagtctgcgctcttaact 287
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tccccttttcccatggtgctcaggacaaaacaagaacagtctgtgctcttaact 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)