BAC Information

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BAC

Clone NameMSMg01-293E11
Chromosome9 (Build37)
Map Location 68,441,168 - 68,441,344
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneRora, 9530091C08Rik, Narg2, EG665815, EG244913, Anxa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293E11.T7 (MSMg01no293_e11.b1)MSMg01-293E11.TJ (MSMg01no293_e11.g1)
ACCAG421772AG421773
length803732
length of high quality
(start - end)
177 (122 - 298)278 (73 - 350)
definitionCHROMAT_FILE: MSMg01no293_e11.b1 PHD_FILE: MSMg01no293_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:38 2005CHROMAT_FILE: MSMg01no293_e11.g1 PHD_FILE: MSMg01no293_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTACTTGTTCCATCAAGAAATAACCACAAAGTATCACCCTAAAACGGAA
GCTGGGAATCTATTTATCCCCCAAGGGCTCTGCTCTGTGAACCTTTGGTT
TTGATGTATGTTTGCTTGGTTGTTGCAGGGGTTGCTTTGTCTGAGAAGGT
TTTGGGTTCCCGATGAATCTGAGACACAGGGAGAGTGGAGGGTGAAGGGA
GGAGTGACTAAGCTATGCTAATATGTCAGTTTTGTGTGTAAATTCAAAAG
TAACACATTTAAAGTTTATTATGTAGAGCACGAAATAAAGACTCGGCCTA
TGTGCTCTTTTTTTTTTTCCCCCCCCCCCCCCCTGTTTCCAGGTATTATT
CATCCCTTTCTTTACCACCCCCCCCTCTTAAAAAAAAAATTCGCTTTTCT
GTCTGCTGTGCACGAATCACTTCTGACTAATTAATACCTTTACCTCTGCA
TTTTTCTTTTCTCCTCGCCCCTCTTACCCCTGTCGTATACTTACCTTCCC
TTTCTCTCCCCACTTTTTTGCTCTTTATTTTCTACGTGTTCTCTCTCCGC
TTTAATTTTTTTTGACTATGGCTCATTCTTGCCCTCTCTGTCTTTTTTTA
CCTCCTTTCTGTTCTTTCCTCCCGCCACTTTCTCTCTTCTGTTGTTATTC
TCTTCTCTCTTACCATTTTCTAATCCGTTTCAACTTATTTCCTCCGTTAT
GTTTTATTTCCGTCCTTCTCTCTTTTATCTCTATAGCCTCCCCTTTTTTA
TTT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGCAAAGGCCCTAGAGGTAATTTTGC
TAAGTTAGTTTTATTTTGTCAGTATGCCTTGCCTGCCTGTGAATGCACAT
ACCATGTGGGTGCAATTTTTGTGGATTCCAAAGGAGGGCACTAGATCTCC
AGGAACTGGAGTTATGAATCGTTGTGAGCTACCCTGTGGGATACTAGGAA
GCAAACCCTGGTCCTCTGCAAAAGCAGCAAGTCCTCTGAATCTTGCAGCA
ATCTCTCCAGCCCCTATTATATGCTTTTTTAATTGAAGCATTCCTCAGTT
CCACTATTGGATCNTTGCCCCANCGAGCACCCGTAAACAGTAGGGAAATA
TCTACTTTTTTATCCCCCCCCATAACAAAAAAATAGACTTTTGGGTTGAG
CGCTGCCGATTTCTTCAAAAACACCTATTGCATCAACTCATGGATGGGCA
GCTGTTGCATCACCGCTGTTAATACATCCGGTTATTGTGTCTTTACACCT
CACTTCTGCTTATTTACCTATGACTATTACCTTGGCTAATATATCTATTC
TCCTGCCAACAGCCCTACCTGTAAATTTCCCGCCCTCTCTTACGTCTGCC
CCAGCGTTATTTGCCATCCATTCATCCGCAATTGTCACTACGCCCTTATT
CCCCCGCGATGTTTCGCCCTGTGCATCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_e11.b1 MSMg01no293_e11.b1 CHROMAT_FILE:
MSMg01no293_e11.b1 PHD_FILE: MSMg01no293_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:38 2005
         (177 letters)



>mm_chr9_68440968_68441544
          Length = 577

 Score =  327 bits (169), Expect = 3e-94
 Identities = 175/177 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagggctctgctctgtgaacctttggttttgatgtatgtttgcttggttgttgcagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagggctctgctctgtgaacctttggttttgatgtatgtttgcttggttgttgcagggg 260

                                                                       
Query: 61  ttgctttgtctgagaaggttttgggttcccgatgaatctgagacacagggagagtggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgctttgtctgagaaggttttgggttcccgatgaatctgagacacagggagagtggagg 320

                                                                    
Query: 121 gtgaagggaggagtgactaagctatgctaatatgtcagttttgtgtgtaaattcaaa 177
           | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaagggaggagtgacaaagctatgctaatatgtcagttttgtgtgtaaattcaaa 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)