BAC Information

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BAC

Clone NameMSMg01-294I07
Chromosome9 (Build37)
Map Location 69,293,300 - 69,293,586
singlet/doubletsinglet
Overlap genenone
Upstream geneRora, 9530091C08Rik, Narg2, EG665815
Downstream geneEG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294I07.T7 (MSMg01no294_i07.b1)MSMg01-294I07.TJ (MSMg01no294_i07.g1)
ACCAG422669AG422670
length733732
length of high quality
(start - end)
320 (43 - 362)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no294_i07.b1 PHD_FILE: MSMg01no294_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:13 2005CHROMAT_FILE: MSMg01no294_i07.g1 PHD_FILE: MSMg01no294_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGAACTCTTCCCCTGGGGAACGGTACTGATGAAGAGAAAGAAGAAAGA
TGAAGACTGAATAAACTGTTCCTAGAAGGACTGGTGGTCGCGTCATTCTT
GCTGGTTGAGAGTGGGCGCGACAATTGGTGGCCCGTACGGGGAACCGACT
CCCCCACCGAGTTCAGAACTTTCAGCAGTCAGTGGTTGCCAGCAGCGTAA
GTTCACGGTGAGTGAAACTTGCGACCCCAGGAGTTTGGGAAGGACCTCGG
ATAAAATAGAGGTGAGCATAAAGTTGCCAGGAAGTAGGCACAAAGTAACC
CAGGAGTTTGTTTTTTTTACCTCGCACCCCCCACAGGGGAATATAAAGTT
GCCAGGAAGCAGGCACACCCCACCGATAGGATCCTGGCTTTGGGACAAGA
TAAGGTTCATGGCTTTGGGGACAAGTTAAGGAACTATGATAACCTCAGTG
TAGTGATCAATAGATCCTCGCTGTGTAGTTATGCTTTTTTCTCCCATTGA
CCCTTTGTGGGTAGGTCTGATAGTTTTGGTCTTGTTTGTTCTGATATATG
GACTCTGTTACTGTTTGAAACTGTGCGTAGAGGCAGTCAAGACAGGTCAG
AAAATCCTTACTGAGCAACTAGAAAGTATGTCGGAAGAGGAGAACGGCTT
ACCCAGAAACGGATCAATAAAGAGACTCTTTGT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGAAACAGCAAGAGCAATAGGAAGTC
ACTATATGATGTTGGTAGAGCCATTGTTCCGTCACAGAAGCTGGGGACAG
GAGCTGGGGACAGGAGCTGGGGACAGGAGCTGTTGGCATACACACAGTAT
GTGATGTTGTCAAGGCTGGGGTCTCCCAGTCTTTGGCTCCTCAGAAACAA
GGCCATCATGGATCGTGAAAACCTGGAGAAAGCCAGACAAGAGGAAATCC
AAGAGGCTGGGGAACAGCCTGGGTAGAAACTACAACCATTGGTTTCCCTT
CTAGGGGGTATTTTCTCTTCCCCCCACCCTCCCAGTTGACTAGCCAGCCA
TAGGTGGCCCAATACTCCCCCGATGAAAATCCAAGTGGCTCCTGCTGGAG
TCCCAGTCTCAGTCAGTACCATAGAAGGAAGAAGAGCCTGTCCTCAGCAC
CCTGCTTTGTCTCAGCAGATGATTCTGGTGCTAGACCCCCTTGTTCAGTT
AGTTGCCTTGGTAAATGGTGTTCTTATGTTCCTGGCCTCAGCCCTGCTTC
ATCTTTGAGCTGAAGGCTGAACAAAGACCAACTCAGCACCCCTTGGACTT
TATTTAATACCACAGTGTTTTGAACTGACATGAATTGAAAATACTATTAT
ATCCAATGACCCAGTTATTTGCACCTTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_i07.g1 MSMg01no294_i07.g1 CHROMAT_FILE:
MSMg01no294_i07.g1 PHD_FILE: MSMg01no294_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:13 2005
         (288 letters)



>mm_chr9_69293100_69293787
          Length = 688

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaacagcaagagcaataggaagtcactatatgatgttggtagagccattgttccgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaacagcaagagcaataggaagtcactatatgatgttggtagagccattgttccgtc 260

                                                                       
Query: 61  acagaagctggggacaggagctggggacaggagctggggacaggagctgttggcatacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagaagctggggacaggagctggggacaggagctggggacaggagctgttggcatacac 320

                                                                       
Query: 121 acagtatgtgatgttgtcaaggctggggtctcccagtctttggctcctcagaaacaaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagtatgtgatgttgtcaaggctggggtctcccagtctttggctcctcagaaacaaggc 380

                                                                       
Query: 181 catcatggatcgtgaaaacctggagaaagccagacaagaggaaatccaagaggctgggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcatggatcgtgaaaacctggagaaagccagacaagaggaaatccaagaggctgggga 440

                                                          
Query: 241 acagcctgggtagaaactacaaccattggtttcccttctagggggta 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagcctgggtagaaactacaaccattggtttcccttctagggggta 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)