Query= MSMg01no294_l03.b1 MSMg01no294_l03.b1 CHROMAT_FILE:
MSMg01no294_l03.b1 PHD_FILE: MSMg01no294_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:26 2005
(585 letters)
>mm_chr9_59156717_59157701
Length = 985
Score = 673 bits (348), Expect = 0.0
Identities = 415/442 (93%), Gaps = 14/442 (3%)
Strand = Plus / Minus
Query: 1 cactatggtaaactgttacatggccacatagcctttcaagctgagggagcatcgctctga 60
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 431 cactatggtaaactgttacatgaccacatagcctttcaagctgagggagca------tg- 379
Query: 61 aacttttctaaacactttgtcttcagcctgaacctgggcttcctcctgactgttatctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 --cttttctaaacactttgtcttcagcctgaacctgggcttcctcctgactgttatctct 321
Query: 121 agaagcccctttctatcctggctgaaccacagtccagtgaagtttctgtcacacctcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaagcccctttctatcctggctgaaccacagtccagtgaagtttctgtcacacctcttg 261
Query: 181 tcttagtcagggtttctattcctgcacaaacatcatgaccaagaagcaagttggggagga 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 260 tcttagtcagggtttctattcctgcacaaacatcatgaccaagaagcaagctggggagga 201
Query: 241 aagggtttattt-gttttacacttccacactgctgttcatcaccaa-ggaagtcaggact 298
||||||||||| | || ||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 200 aagggtttattcagctt-acacttccacattgctgttcatcaccaaaggaagtcaggact 142
Query: 299 ggaactcaagcagatcagaaagcaggagctgatgcagagggcatggagggatgtt-cttt 357
||||||||||||| |||| |||||| |||||||||||||| |||||||||||||| |||
Sbjct: 141 ggaactcaagcaggtcaggaagcagaagctgatgcagaggccatggagggatgttactt- 83
Query: 358 actggcttgcctcacctggcttgctcagcctgctttcttatagaacccaagactaccagc 417
|||||||||| || |||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 82 actggcttgcttcccctggcttgctcagcctgctttcttatacaacccaagacaaccagc 23
Query: 418 ccagagatggtcccaaccacaa 439
||||||||||||||||||||||
Sbjct: 22 ccagagatggtcccaaccacaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no294_l03.g1 MSMg01no294_l03.g1 CHROMAT_FILE:
MSMg01no294_l03.g1 PHD_FILE: MSMg01no294_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:26 2005
(293 letters)
>mm_chr9_58995785_58996476
Length = 692
Score = 559 bits (289), Expect = e-164
Identities = 292/293 (99%), Gaps = 1/293 (0%)
Strand = Plus / Plus
Query: 1 ttcagaagaatgtaaaagccttggactggtgaggggctggggctcagcctttcatgagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagaagaatgtaaaagccttggactggtgaggggctggggctcagcctttcatgagct 260
Query: 61 actggtagtgaataaatttatctagcccctgtctcaagtgcccagggatggtaggaatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actggtagtgaataaatttatctagcccctgtctcaagtgcccagggatggtaggaatga 320
Query: 121 tcatattaaatgaatgtacctttgacccagaaacaccatctctcatcatctccccaaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatattaaatgaatgtacctttgacccagaaacaccatctctcatcatctccccaaggc 380
Query: 181 aatagttgccaaagcatacaaaaccctaaagacaaagatttcactctccatttttttttt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatagttgccaaagcatacaaaaccctaaagacaaagatttcactctccattttttttt- 439
Query: 241 gtataatgctgaaaaatactagttgttcatcagtagcattaaaattatcagtt 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtataatgctgaaaaatactagttgttcatcagtagcattaaaattatcagtt 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space: 193972
Effective search space used: 193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
