Query= MSMg01no294_n11.b1 MSMg01no294_n11.b1 CHROMAT_FILE:
MSMg01no294_n11.b1 PHD_FILE: MSMg01no294_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:36 2005
(313 letters)
>mm_chr9_43485606_43486317
Length = 712
Score = 553 bits (286), Expect = e-162
Identities = 304/310 (98%), Gaps = 1/310 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactttgtagagcaggctggcctttaactctcagagatccacctgcttctgcct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttgtagagcaggctggcctttaactctcagagatccacctgcttctgcct 263
Query: 64 cctaggtaggtgccgcgattaaagatgtgtgcctctgtgtcctgctcaggatagacatat 123
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctaggtaggtgctgtgattaaagatgtgtgcctctgtgtcctgctcaggatagacatat 323
Query: 124 atgcccctatgttctgagtgtggacttaacttgggggggatggactattcaagcccactg 183
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 324 atgcccctatgttctgagtgtggacttaacttggggag-atggactattcaagcccactg 382
Query: 184 cgatatattttattttccaaatcctactaccatgatgtgtaatatgctgaggagtatgaa 243
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 383 cgatatattttattttccaaatcctactaccataatgtgtcatatgctgaggagtatgaa 442
Query: 244 ttaagagtggaattcaaaggtcacactcttcccccaaactccatcccctcccctctttcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttaagagtggaattcaaaggtcacactcttcccccaaactccatcccctcccctctttcc 502
Query: 304 tcatctcagg 313
||||||||||
Sbjct: 503 tcatctcagg 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 712
Length adjustment: 9
Effective length of query: 304
Effective length of database: 703
Effective search space: 213712
Effective search space used: 213712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no294_n11.g1 MSMg01no294_n11.g1 CHROMAT_FILE:
MSMg01no294_n11.g1 PHD_FILE: MSMg01no294_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:36 2005
(285 letters)
>mm_chr9_43662519_43663203
Length = 685
Score = 478 bits (247), Expect = e-139
Identities = 275/289 (95%), Gaps = 11/289 (3%)
Strand = Plus / Minus
Query: 1 caggccagcctgggctacacagtgacttccaggccagcctcatcttt----ccccttgca 56
|||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 575 caggccagcctgggctacacagtgacttccaggccagcctcagctttataa----ttgca 520
Query: 57 aataaatgagtgggtttatttatttatttatttatttttaaaatttaaatttgtgcctta 116
|||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||
Sbjct: 519 aataaatgagtgggtttatttatttatt--ttt-tttttaaaatttaaatctgtgcctta 463
Query: 117 aaagcttgagaaaaaaagcttgtgcagtgctaggtctgggcacctagtaaatgctcgtct 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aaagcttgagaaaaaaagcttgtgcagtgctaggtctgggcacctagtaaatgctcgtct 403
Query: 177 gttcatgtcctcctgacaggggcttcacaggtgcaagaacggctcctgatgccacccctc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gttcatgtcctcctgacaggggcttcacaggtgcaagaacggctcctgatgccacccctc 343
Query: 237 gcccccgtgcctgctcagagaaatctaagatgccttccagagagggaaa 285
| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtccccgtgcctgctcagagaaatctaagatgccttccagagagggaaa 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
