BAC Information

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BAC

Clone NameMSMg01-294O08
Chromosome9 (Build37)
Map Location 111,756,108 - 111,756,382
singlet/doubletsinglet
Overlap genenone
Upstream gene1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
Downstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294O08.T7 (MSMg01no294_o08.b1)MSMg01-294O08.TJ (MSMg01no294_o08.g1)
ACCAG422945AG422946
length725728
length of high quality
(start - end)
315 (42 - 356)287 (73 - 359)
definitionCHROMAT_FILE: MSMg01no294_o08.b1 PHD_FILE: MSMg01no294_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:40 2005CHROMAT_FILE: MSMg01no294_o08.g1 PHD_FILE: MSMg01no294_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAATTAATTCAGCATCAGTGGAGCCATGGTGTACTGGCTGGTTTTGTGT
GTCTACTTGACACACGCTGGAGTTATAGAGAAAGGTGCCTGCCTTGAGGA
AATGCTTCCATGAGACCAGGTTCTAAGGCATTTTATCAATTAGTGATCAA
GGGGGAAGGGCCCATTGTGGGGGGTGCCATCCCTGGGCTGGTAGTCCTGG
GTTCTATAAGAAAGCAAGCTGAGCAATCCAGGGGAAGCAAGCTAGTAAGT
AGTGCTCCCCCAGGGCCTCTGCATCAGCTTCTGCCTCCAAGTTCCTACCC
TGTGTTTGTTTTTTTCCTCGACCCCCTTGGTGATGAACAGCAATGTGGAG
TGTAAGCAGAGCCCTTTCCTACAAAAAATTGCTTCTTTGGCGTGATGTTT
TATGTATGAATTCAAACCCTAAGACGCACGGTAATGTCTTGCTTTTAAAA
TGAAAATAGGGGTTGAATACTTTTCCTTTCTGCATGTCTTGGGACACACC
TTTTAAATTTTTTCTACTTCTAATAAGATTCATTTTCCTTGAATCTGAGA
CCAAGGAGATATTTTGGAATCACGCTGGTGATTATGAATGCTTGCTGTAG
GCTTTGGCTTTGCTTTAAACCTGTGCCCTTTGGTGTTTGTTCTTTTCTGA
CTATTCCAGTGACCTGACCCTGTAC
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCACTGCATCTTCCTTTGTGTTCTAC
AAGATACACCTGTTCCAATTCATAAAGAATGTACAGGATTCAAATACCTG
AGACATCCCTCTCCTAGTGAAAGAAACCCATCTGTGGCAAAATCTTTTCT
TTTGGCAAAATCTAAGATGTGTCTGTATCTACACGTTCACTTTACTATTA
GATTGTTCTGTCAGGGACTTAAAAGCAGGACAGGCAGTGAAGTGCACACA
GTTACTCTCAGTGTTATCTATACTCGCTCTTACCTCAGCAATATTCCAAA
TCAATCTTTCTTTTCATCCCCCCACCAAAGAGCCTCTTTGGGGAAACAGG
TAAAATGAAGCTGACCTCTCAAAAAAAAGATACACACACCAGGTGGAACA
AAGCAATTTTCTCCACCCACTGCAAGTTGGCTTCTTGGAACTCAAGAGAC
CTCTGTCTTACTTACACAGGCACTGAATCTACATCAGAAGGGGACACATG
AAACATTTGTCTTTATACTTCTCACGTTCTACTGGAGGGAAAGTCCACAG
ACATCAAAAACAAACAAATAAAATACAAACAAACAAAATGATGTTGGTTG
TAGACTGTAACCAGTCCTTCTGTGGAAACATTAAGACGGCGTGTGGATAA
GTAGTTTGGTTGTTTAAGATGCTTGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_o08.g1 MSMg01no294_o08.g1 CHROMAT_FILE:
MSMg01no294_o08.g1 PHD_FILE: MSMg01no294_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:40 2005
         (287 letters)



>mm_chr9_111755977_111756663
          Length = 687

 Score =  460 bits (238), Expect = e-134
 Identities = 269/284 (94%), Gaps = 9/284 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcactgcatcttcctttgtgttctacaagatacacctgttccaattcataaagaatgt 60
           ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tctcattgcatctttctttgtattctacaagatacacctgttccaattcataaagaatgt 347

                                                                       
Query: 61  acaggattcaaatacctgagacatccctctcctagtgaaagaaacccatctgtggcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 acaggattcaaatacctgagacatccctctcctagtgaaagaaacccatctgtggcaaaa 287

                                                                       
Query: 121 tcttttcttttggcaaaatctaagatgtgtctgtatctacacgttcactttactattaga 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 286 tcttttcttttggcaaaatctaagttgtgtctgtatctacacgttcactttactattaga 227

                                                                       
Query: 181 ttgttctgtcagggacttaaaagcaggacaggcagtgaagtgcacacagttactctcagt 240
           |||||||||||||| |||||      ||   ||||||| |||||||||||||||||||||
Sbjct: 226 ttgttctgtcagggtcttaa------ga---gcagtgacgtgcacacagttactctcagt 176

                                                       
Query: 241 gttatctatactcgctcttacctcagcaatattccaaatcaatc 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gttatctatactcgctcttacctcagcaatattccaaatcaatc 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)