BAC Information

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BAC

Clone NameMSMg01-294P06
Chromosome9 (Build37)
Map Location 101,629,565 - 101,629,881
singlet/doubletsinglet
Overlap genenone
Upstream geneStag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
Downstream geneEphb1, 9630041A04Rik, Ky, LOC664843, Cep63, Anapc13, Amotl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294P06.T7 (MSMg01no294_p06.b1)MSMg01-294P06.TJ (MSMg01no294_p06.g1)
ACCAG422985AG422986
length742746
length of high quality
(start - end)
320 (44 - 363)295 (74 - 368)
definitionCHROMAT_FILE: MSMg01no294_p06.b1 PHD_FILE: MSMg01no294_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:44 2005CHROMAT_FILE: MSMg01no294_p06.g1 PHD_FILE: MSMg01no294_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGCAGTTTAGTGAAGTAAAGTGTTACAAACAACAGCTAAGAGTGAA
TGTGCGTTTCAAGTTGTGGGAGTGCTAATTTTAAATTTTTTGTTCCAGAA
AAGGATTATAGAAATGTAAAACAAAAATATTTCGACTTGAAAAATACTTC
GTAATTATATGTCATAAAATAATTAGGTCATGGCAAATTAGCACAAATGT
TTACAGCAAAATTGCCATGTAAAACATTATCGGTAATATTATGCTAATTG
CTTCAGAAGCAAAAGCTGATTATGTTTCGGCAGGATTAAAATTTGCCACG
TTTGCATTTCTCTTCTTTTTCACCCCCCCTCCACTGTGAGCACCAAACCT
GTGATTACTATAGAAATCAAACTGCCCATTAAAAGAGAGACCTTTCTTCC
GGATACCAAGCCAGTGCATGAAAGAAAGGGAGATTCCTGGGGTAAAACTT
ACCCATCTTGTTGGGGCGCAGCAAGGTGGGCAGCTGAATTATGTGCTCTG
AGGGGCAGACCTGTAACACCAGATCCTGCTGGAGTGGCATCTCAAGGAAT
CTCCCAAGCCTTAATGAGCATCCGAGTCTGTATAATACAGCTGTTACCAG
CACATCTGGAATAAGTCAATCCTAACAATCCTAACAAGATCTCAGGGATG
CTGGCATATCTGGTCTATGGATCATGCTTTGAGTAACCTGCT
ATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGAGTGGTCCCAGCAGAAGTGCTCAG
CAGGAGTGAGGAAAAGAACAGAACCTTTGGTGCTTTGTCCTGTGCCTCTG
GTATTAGCTTCTGGGGCTGATGCTGCAAAGAGTCGCAAACTATGGAGCTT
GTGGAACAGGGATAAAGTGTCTCATAGTTCTGGAAGTCAACAGTGGGAGG
TGGAGGAATGACAGGGTGTCTTCTGAGGCTTGGGGGAAAATCGTTTTCCA
TGGGTACTCAAAGCACGTTGGTGTCACTCTCTGGTGTTCTTGGTCTTATA
GCATATCCCTGATCCTGTTCTTCCCACTTCCCACTGTGTTCCTGTATCTG
CATCCCAATGTCCCCACGGCATAATGATTTCGGACCTTGTGAGTTAGGAG
CCCACTCTACTCTTCTATGATCGTAACCATGCCTGCAAAAGCCATGGTTC
CTAATAAGAACACTTTCTGGGATACCAGGGGTTAATACATTCCATAGAGG
AAGTTGGGGAAACAAATTAATCATAATTAAGCTGAAGGCTAGAGGTCTTC
CTCCTCTAAAGAACATGTGCTTTTGGAGGACAGAGTGTTCGGGTCAGAAA
GCCTGGCTTCCCCTTTATGACCTATCCTGTATATAATGGTGTACGGCAGG
TTTATTGAAGGGAAAGGACAGGTGAATCTCAGCTGACGTAACCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_p06.b1 MSMg01no294_p06.b1 CHROMAT_FILE:
MSMg01no294_p06.b1 PHD_FILE: MSMg01no294_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:44 2005
         (320 letters)



>mm_chr9_101629362_101630081
          Length = 720

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctgcagtttagtgaagtaaagtgttacaaacaacagctaagagtgaatgtgcg 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 204 ggaattcctgcagtttagtgaagtaaagtgttacaaacaacagctaagagtggatgtgca 263

                                                                       
Query: 64  tttcaagttgtgggagtgctaattttaaattttttgttccagaaaaggattatagaaatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttcaagttgtgggagtgctaattttaaattttttgttccagaaaaggattatagaaatg 323

                                                                       
Query: 124 taaaacaaaaatatttcgacttgaaaaatacttcgtaattatatgtcataaaataattag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaaacaaaaatatttcgacttgaaaaatacttcgtaattatatgtcataaaataattag 383

                                                                       
Query: 184 gtcatggcaaattagcacaaatgtttacagcaaaattgccatgtaaaacattatcggtaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtcatggcaaattagcacaaatgtttacagcaaaattgccatgtaaaacattatcggtaa 443

                                                                       
Query: 244 tattatgctaattgcttcagaagcaaaagctgattatgtttcggcaggattaaaatttgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tattatgctaattgcttcagaagcaaaagctgattatgtttcggcaggattaaaatttgc 503

                            
Query: 304 cacgtttgcatttctct 320
           |||||||||||||||||
Sbjct: 504 cacgtttgcatttctct 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)