Query= MSMg01no295_b20.b1 MSMg01no295_b20.b1 CHROMAT_FILE:
MSMg01no295_b20.b1 PHD_FILE: MSMg01no295_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:57 2005
(318 letters)
>mm_chr9_18445272_18445989
Length = 718
Score = 576 bits (298), Expect = e-169
Identities = 310/314 (98%)
Strand = Plus / Plus
Query: 5 gaattcaccatctcaggagcactggttgagattactgtagatacagtccctgaagtgctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccatctcaggagcactggttgagattactgtagatacagtccctgaagtgctt 264
Query: 65 tctcctccagcatgagtgatgaatgaagttatggtctgtgtttcagaggaagtttgaatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctcctccagcatgagtgatgaatgaagttatggtctgtgtttcagaggaagtttgaatt 324
Query: 125 ttctttattgaagtcatcatctctgaaccgctggatgagattaatgtagattcagttcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctttattgaagtcatcatctctgaaccgctggatgagattaatgtagattcagttcct 384
Query: 185 gaagtatttcttcttccagtatgggcagaccatgtggttgtagatcctgcttgatctatg 244
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaagtatttcctcttccagtatgggcagaccatgtggttgtagatcctgcttgatctatg 444
Query: 245 gaaataacctgtgtagaagttgctgaatggctttttgttccatagctagtgaccactgat 304
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 445 gaaataacctgtgtagaagttgctgaatggctttctgggccatagctagtgaccactgat 504
Query: 305 ggtgtaatttctgg 318
||||||||||||||
Sbjct: 505 ggtgtaatttctgg 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_b20.g1 MSMg01no295_b20.g1 CHROMAT_FILE:
MSMg01no295_b20.g1 PHD_FILE: MSMg01no295_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:57 2005
(295 letters)
>mm_chr9_18624083_18624771
Length = 689
Score = 462 bits (239), Expect = e-134
Identities = 279/295 (94%), Gaps = 6/295 (2%)
Strand = Plus / Minus
Query: 1 agtttcatctttggctacatgagaggtgaatgggtgagttagaagattttgtcacaaaga 60
||||||||||||| |||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 489 agtttcatctttgtctacatgagaggtgaaaggctgggttagaagattttgtcacaaaga 430
Query: 61 tagaaataaaatagaaacagtaaaaattataacacaaataactttacatgtattttctga 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tagaaataaaatagaaatagtaaaaattataacacaaataactttacatgtattttctga 370
Query: 121 agtcaacactgaacaattaaaatgaaacaggattttcagagaaaaaaatgttctcagata 180
||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 369 agtcaacactgaacaatgaaaatgaaacaggattttcagagaaaaaatttttctcagata 310
Query: 181 tagctcattgatgacaaacaagtgttagttataattatatctctgataaccacatacata 240
||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 309 tagctcattgatgacaaacaagtgtta-tt-----tatatctctgataaccacatacata 256
Query: 241 agccatgttttacttttgaaatagaaatgaaatttcctgatatctttatatgtgt 295
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 255 agccatgttttacttgtgaaatagaaatgaaattccctgatatctttatatgtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 689
Length adjustment: 9
Effective length of query: 286
Effective length of database: 680
Effective search space: 194480
Effective search space used: 194480
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
