Query= MSMg01no295_g24.b1 MSMg01no295_g24.b1 CHROMAT_FILE:
MSMg01no295_g24.b1 PHD_FILE: MSMg01no295_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:22 2005
(320 letters)
>mm_chr9_54608365_54609084
Length = 720
Score = 536 bits (277), Expect = e-157
Identities = 308/325 (94%), Gaps = 11/325 (3%)
Strand = Plus / Plus
Query: 7 attccacagacagaattaattgatatttggacagctatatgttcagacaagaagtgacct 66
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 196 attccacagacagaattaattgatatttggacagctatatgttcagacaagtagtgacct 255
Query: 67 ttgtcaccctgact-----------atcttctagttagggattgaacagttagggaccaa 115
||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 256 ttgtcgccctgactatgccaatcaaatcttccagttagggattgaacagttagggaccaa 315
Query: 116 ggtatgaccctatctttaccattgccaagttcccagatcatgtcactagaattgatttgg 175
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggtatgaccctatctttactattgccaagttcccagatcatgtcactagaattgatttgg 375
Query: 176 aattccaagtccctgtcaccaggtctcacagagcctttcagagtctgctttaaagcctca 235
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 376 aattccaagtccctgtcaccaggtctcccagagcctttcagagtctgctttaaagcctca 435
Query: 236 gatccaaacatggtggtccatactgccccatccctttatcccacatcagacaatagctgg 295
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 436 gatccaaacatggtggtccatacggccccatccctttatcccacatcagacaatagctgg 495
Query: 296 tctttgctgctttgtgggttcttct 320
|||||||||||||||||||||||||
Sbjct: 496 tctttgctgctttgtgggttcttct 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_g24.g1 MSMg01no295_g24.g1 CHROMAT_FILE:
MSMg01no295_g24.g1 PHD_FILE: MSMg01no295_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:22 2005
(238 letters)
>mm_chr9_54792441_54793078
Length = 638
Score = 373 bits (193), Expect = e-108
Identities = 211/217 (97%)
Strand = Plus / Minus
Query: 19 acacacacacacacacacacacacacacacacacacacacacaaggatgaaggaaaactg 78
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 478 acacacacacacacacacacacacacacacacacacacacaaaaggatgaaggaaaactg 419
Query: 79 gggaaaacattttggaacaataatgagtacagatcatcacaaatcaagacatatgcataa 138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aggaaaacattttggaacaataatgagtacagatcatcacaaatcaagacatatgcataa 359
Query: 139 ttaattttatgtttgcagtccaaataaaggcaaagaataaaaatcacaaaaattcatgat 198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttaattttatgtttgcagtccaaataaaggcaaagaataaaaatcacaaaaattcatgaa 299
Query: 199 tttttcacctatttcaagaagcttttaaaaagcaaac 235
|| ||||||||||||||||||||||||||||||||
Sbjct: 298 ttaagcacctatttcaagaagcttttaaaaagcaaac 262
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
