BAC Information

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BAC

Clone NameMSMg01-295L01
Chromosome9 (Build37)
Map Location 71,640,788 - 71,641,009
singlet/doubletsinglet
Overlap genenone
Upstream geneLipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
Downstream geneTcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295L01.T7 (MSMg01no295_l01.b1)MSMg01-295L01.TJ (MSMg01no295_l01.g1)
ACCAG423513AG423514
length742855
length of high quality
(start - end)
224 (127 - 350)144 (76 - 219)
definitionCHROMAT_FILE: MSMg01no295_l01.b1 PHD_FILE: MSMg01no295_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:41 2005CHROMAT_FILE: MSMg01no295_l01.g1 PHD_FILE: MSMg01no295_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTGTTTATGACATGATACTGGTAATAAGAAAGTTTCAAATTTTAC
AGAGTTTTGAATTTTGTATCTCCCGTTAGAATCTGAGATGTCTGTATGAA
CCCAAAGCCCATATTAGAGATGCTTAGCTTGTATTATAGCCACACAATAC
AATAAAATACCCACAAGTCTATACTCAGGTAACCCAGATAACCAAGGGGG
AGATAAAGAATAGTTCTCTGCAGATAGAATTCCAGTTCCTATATGAGTAA
TAAATGGGGGGTTTTATATAATAGTCTATGAAGGAATAAGAGATTATAAT
ATATACAATGATTGCTTAATAAAGCACCCCCATAGTTCTAATTATGCTAC
TCCGAGGGTAATTATTACCCCCACCACAGACTAACAAATGATATTAACTT
ACCACAAAGTTTAGATGATATGTGACATTTACATAGTCTCATAACTTGTT
CCTTATGGTGCTTATTATAGGCACACCTTTAACGCCATCACTCAGGAAGC
ATAGGCTAGTGGATCTCTGTGAGTGTCTATTGAGCAAGTTCCAGGACAGC
CATTTCTTCCTATAGAATACCTATCCCTTGTAAATTCTCCGATCTCCCTA
TACATATCACCGTCCTTCACATCTACCCTACTTCTTCTAATCCAACTTTA
CCTTTCTACTACCAAAAAGATCGCAAGGTTGTACCCTCCCCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTACGTACCCAAAAGACCTTGAAC
ACCTGATTCTCCTGCCTCTACCGGCTGAGTGCTCAGATTACAGGAGTATG
CCATCGTCTGACCTCAAATTGACTTTATCTTTCTTTCTCTTTTGGGAGGG
AGTGGGGGTGAGGAGGTGTCTCATTATTTCTCTGCTTTTTCTGCTTTATT
TCGCCGTTTTTGACCTCCTTTTTCTTCTTTTTTTTTCAATTTCCCCCTTT
CCCCACTAACTGAACTATTTCTTAATACTTTTTTTTTTTTTTCCCCTTTT
ACTAAACACAGAAAAAGGGATTTTGATGCTTTCCCCCCCCCCCCCCCCTT
CTGTTTTTTTTTATTTTTTTTTTTTTTATTTTTTTTCCCCCCCCCACAAA
TAAAAAAAAAAATACTATTCCCTTCGGGGGGTCTCCTTCATTTCTTTTCA
CTCCTCTACGGCGTTCCCCTTGACCTCTCTTCCTCCTCAATATTACTTCA
TCCCTCCCTTCTTTTTTTTGCCCCTCCCCTTATTGCCCTCTTTCTCTTTC
CTTCCTTCTCCTCTTCTTCCTTTTACTCACTTTTTTTCCCCCGTTTCCCA
TCCCATTATCTGTTACCAATCTTTCCCCACCCCTGTATTTCTTCCTATTT
CTTCATTAAGGTTCCCATTTTTCTTATCCGCTATCTTCTCTCTTTCTTTT
CGTTTTTTTTTTATTTCTTGTCTCCTTTCTTTTTTCTCGTTCTTTTTTTT
TTCCGCTTTCTCTTCCTTCATCGCCCTCCCTCCCTTGTTTCATATTTCTC
ATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_l01.b1 MSMg01no295_l01.b1 CHROMAT_FILE:
MSMg01no295_l01.b1 PHD_FILE: MSMg01no295_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:41 2005
         (224 letters)



>mm_chr9_71640588_71641211
          Length = 624

 Score =  398 bits (206), Expect = e-115
 Identities = 218/222 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaatctgagatgtctgtatgaacccaaagcccatattagagatgcttagcttgtatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tagaatctgagatgtctgtatgaacccaaagcccatattagagatgcttagcttgtatta 363

                                                                       
Query: 61  tagccacacaatacaataaaatacccacaagtctatactcaggtaacccagataaccaag 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 362 tagccacacaatacaataaaatacccacaagtctatactaaggtaacccagataaccaag 303

                                                                       
Query: 121 ggggagataaagaatagttctctgcagatagaattccagttcctatatgagtaataaatg 180
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 302 ggggagataaaggatagttctctgcagatagaattccagttcttatatgagtaataaatg 243

                                                     
Query: 181 gggggttttatataatagtctatgaaggaataagagattata 222
           |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 242 gggggttttatataatagtcaatgaaggaataagagattata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)