BAC Information

Click to search

BAC

Clone NameMSMg01-296I14
Chromosome9 (Build37)
Map Location 89,108,740 - 89,109,047
singlet/doubletsinglet
Overlap geneMthfs
Upstream geneEG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b
Downstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296I14.T7 (MSMg01no296_i14.b1)MSMg01-296I14.TJ (MSMg01no296_i14.g1)
ACCAG424122AG424123
length742748
length of high quality
(start - end)
314 (46 - 359)232 (447 - 678)
definitionCHROMAT_FILE: MSMg01no296_i14.b1 PHD_FILE: MSMg01no296_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:45 2005CHROMAT_FILE: MSMg01no296_i14.g1 PHD_FILE: MSMg01no296_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:45 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAGGGAAGAATGGAGTCTGCCCACCTCCTGTGTCCATGTTTTAA
TGGTGCTGTGTCTATTTTTACCCCCTCATCTTCCCTCTGACTTATAGGAA
TCATTGTCTTCATCCTCCCTTCCTAACAGATAGCATGGAAATGGGCTGGA
GGAAGAAAGGCAAATGCATATGCATAATCTCACACTGATTTTAGCTGTGT
GTCTTATTGTTTCTTTAGCTCTTGTTTTTCTACACTCTGCTGTAAAGAGA
CTAAGAAAAAGACTTTCTTATATAGTAAGCGGTGTGAAAAGCCTCAGGCC
TGCTCCTTTTTTTTGTTTCCATCCGCTTCATTTCTGCCAGCAGCTTCTGA
CAGCTTCGCAGGCACGACTTCCTTCCCTAACCTCGCTTTGCTATGCTTTG
CTTAACTTCCGTCTCCCCTTGGTATTAGATGTAACTTTGCTTTCTTCCCC
TAAGTCTTTCTGTCAGCCATATTTGTAAGCTGCCATTGCGTTATCCTTCT
TTCCTTAGCTTGAAGGACAGGGGGGAACAGAAAAGCAGTGGACACAGAAA
GGGAGTAAGGGGCCGACTTCTGAGTCTGGGTAAGTGCTTAGGACTTCATG
AGCACAACTTAGCTCCCACTGTCTGATGAGCGATTCCACTCAATGTAGAT
TCTTGCTCCAGGAGCCCTTTGCCCCCATTTTAATGAACTCTG
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGACTGTCCTATGTCTCACCCTGGG
GTTAGCAAATAGTTTCTTCTCCTCAGCTGATGTTCTTTTATTATCTTTTT
TTTCTTGATAATTTGAGCTTAAGGCTCCTCCTAAACCCATGCCATGGTAT
GTTTTAATTAACTACCTAATGATGATGAAATGTGGTGCTTTCTATAAAGA
GGTCATGAACTCTTAAAACATAGTTATCAAATATCATTGATATTTGATTT
TTCACAATATGCCTCTTTTCTGATTGTTACTCTTCTTATAGTCCATAGGT
TGGATTCTAGATATTCTGTTCTTTTTGTCCACTATCCACTAATATCATGG
ACTACATGCCAGTAGCTTTCCTCTTGATAATGGATTACCTCACACAGGAT
GAGATTTTCTAATTCCATCCATTTGCCTGCAGAGCTCATGATGTCTTTGT
TTTTAATAGCTAGATAGTATTCCATTGTATAAATGAAGCATATTTTCTGT
ATCCATTCCTCAGTTGAGAGACATTGGGTTGTTTCCAGCGACTGGTTATC
ACGAATAAGACTGCTATAAACTTAGTGTAGCATGTGTCCTTGTGGTATGG
TGGAGCATCTTTTGGGTATATGCCCAAGAGCAGTATCGCTGGGTCTTCGG
GTAGAGCTATTTCCAATCTTCTGATGAACTACCCGATTGTTTTTCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_i14.b1 MSMg01no296_i14.b1 CHROMAT_FILE:
MSMg01no296_i14.b1 PHD_FILE: MSMg01no296_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:45 2005
         (314 letters)



>mm_chr9_89108537_89109250
          Length = 714

 Score =  526 bits (272), Expect = e-154
 Identities = 299/308 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaagggaagaatggagtctgcccacctcctgtgtccatgttttaatggtgctg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaagggaagaatggagtctgcccacctcctgtgtccatgttttaatggtgctg 263

                                                                       
Query: 64  tgtctatttttaccccctcatcttccctctgacttataggaatcattgtcttcatcctcc 123
           |||||||   |||   |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 264 tgtctataaatactggctcatcttccctatgtcttataggaatcattgtcttcatcctcc 323

                                                                       
Query: 124 cttcctaacagatagcatggaaatgggctggaggaagaaaggcaaatgcatatgcataat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttcctaacagatagcatggaaatgggctggaggaagaaaggcaaatgcatatgcataat 383

                                                                       
Query: 184 ctcacactgattttagctgtgtgtcttattgtttctttagctcttgtttttctacactct 243
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 ctcacactgattttagctgtgtgtctcattgtttctttagctcttgtttttctacactct 443

                                                                       
Query: 244 gctgtaaagagactaagaaaaagactttcttatatagtaagcggtgtgaaaagcctcagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctgtaaagagactaagaaaaagactttcttatatagtaagcggtgtgaaaagcctcagg 503

                   
Query: 304 cctgctcc 311
           ||||||||
Sbjct: 504 cctgctcc 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)