BAC Information

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BAC

Clone NameMSMg01-296O08
Chromosome9 (Build37)
Map Location 13,756,226 - 13,756,887
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665285, LOC100039729, LOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329
Downstream geneSesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296O08.T7 (MSMg01no296_o08.b1)MSMg01-296O08.TJ (MSMg01no296_o08.g1)
ACCAG424380AG424381
length731737
length of high quality
(start - end)
229 (110 - 338)662 (76 - 737)
definitionCHROMAT_FILE: MSMg01no296_o08.b1 PHD_FILE: MSMg01no296_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:12 2005CHROMAT_FILE: MSMg01no296_o08.g1 PHD_FILE: MSMg01no296_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCCTATATCGAGAGGATCCGCGGAATTCACTGGTCTTACCACATTCCC
CATCATCCTGAAGCAGCTGGTCTGATAGAAAGATGGAATGTTTTTTTCCC
GACAAAGTTACAGCGCCAATTAGGTGGTAACAGCTTGGAAGGCTGGGGCA
GAGTTCTTCAGAAGGCAGTATATGCTTTGAATCAGCGCTCGATATATGGT
ACAGTTTCACCCATAGCCAGGATTCATGGGTCCAGGAATCAAGGGGTGGA
AAATGGAATAGTTCCACTTACTATCACTCCTAGTGACCCTCTAGGAAAAT
TTTTGCTTCCTGTCCCCATAACTCTAGGTTCTGCTGGTCTATTAAGTTTT
GGCTCCCCACAGGGGAGTACTCCTACCAGGAGCTACAACAAACATTCCAT
TGAACTGGAAGCTCAGACTTCCCCCTGGTCATTTTGGGCTTCTAATGCCC
TTAAACCAACAGGCTAAAAAAGGAATAACAGTGTTAGGAGGGGTGATAGA
TCCAGATTACCATGGGGAAATTGGATTACCTCTTCACAATGGTGGTAAGC
AAGATTATGTCTGGAGTGTAGGAGATCCCTTAGGGCGTCTCTTAGTACTA
CCATGTCCTGTGATTAAAGTCAATGGGAAACTACAACATCCTAATCCAAG
CAGGATGACAAAGGACACAGACCCATCAGGAATGAAGGTATGGGTCAATC
CTCCAGGAAAAGAGCCTAGACCTGCTGAGGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTATGTTCTTTCTAGAAAGGACAC
CTGACTCCAGTTTCCCGGAGTCGGGAGTCTTCGGTCCTTTCTGCCCTACC
TGGCAGACCTTACACATGCACACCATTGAATCAAATGCTGATGTGGAACT
TTGTGGTCAGGGCTGCCTCCACCCACGCTGTCTTCATGAAGGAGCACTAT
GTCCAACTGCCAGCCTCCTAAAGGGCTAGCTAGAGATAAAAGCTGTGTTT
TTTAGGGCTGCTTTGTAGACACAAAGAGGCCTTTCTCTGTTCCTTTGTTT
GAGCACTCCCATCTTGCCTGCAACAGCCAAGCTTGTTGGTTAAAGAGAAA
TATGGAGTTCTAACACCAAATCTCAGTGGCCCATAGGCTTCAGAAGAATG
TGTGTGGTAACACACATTGTCAGACAGAAGAGTGACATCAGAACACAGAG
CCATCTGTGGGGTTACAGAATTTCCTCCAAACCACAACCCCCAAAACACT
TGTGAGTCTTTTACTTGATTTGTGACATTAATTATGTAGGCATTATGGGC
TATGAGCCCCTTCACTGCAGCTTAAAGGCAAACTATTTTGCAGAGATATT
TCCGTCTTCCTATTAGGTACCCATTCTATATACATTATGGACCACTGACA
TCTCATCCAGAGGGTGAGAGCAAGTGGTTTCCACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_o08.g1 MSMg01no296_o08.g1 CHROMAT_FILE:
MSMg01no296_o08.g1 PHD_FILE: MSMg01no296_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:12 2005
         (662 letters)



>mm_chr9_13756026_13757087
          Length = 1062

 Score = 1210 bits (626), Expect = 0.0
 Identities = 653/662 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatgttctttctagaaaggacacctgactccagtttcccggagtcgggagtcttcggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatgttctttctagaaaggacacctgactccagtttcccggagtcgggagtcttcggt 260

                                                                       
Query: 61  cctttctgccctacctggcagaccttacacatgcacaccattgaatcaaatgctgatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttctgccctacctggcagaccttacacatgcacaccattgaatcaaatgctgatgtg 320

                                                                       
Query: 121 gaactttgtggtcagggctgcctccacccacgctgtcttcatgaaggagcactatgtcca 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaactttgtggtcagggctccctccacccacgctgtcttcatgaaggagcactatgtcca 380

                                                                       
Query: 181 actgccagcctcctaaagggctagctagagataaaagctgtgttttttagggctgctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgccagcctcctaaagggctagctagagataaaagctgtgttttttagggctgctttg 440

                                                                       
Query: 241 tagacacaaagaggcctttctctgttcctttgtttgagcactcccatcttgcctgcaaca 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tagacacaaagaggcctttctctgttcctttgtttgagcactcccaccttgcctgcaaca 500

                                                                       
Query: 301 gccaagcttgttggttaaagagaaatatggagttctaacaccaaatctcagtggcccata 360
           | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 501 gtcaagcttgttggttaaagagaaatatggagttctaacaggaaatctcagtggcccata 560

                                                                       
Query: 361 ggcttcagaagaatgtgtgtggtaacacacattgtcagacagaagagtgacatcagaaca 420
           || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtttcagaagaatgtgtatggtaacacacattgtcagacagaagagtgacatcagaaca 620

                                                                       
Query: 421 cagagccatctgtggggttacagaatttcctccaaaccacaacccccaaaacacttgtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagagccatctgtggggttacagaatttcctccaaaccacaacccccaaaacacttgtga 680

                                                                       
Query: 481 gtcttttacttgatttgtgacattaattatgtaggcattatgggctatgagccccttcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcttttacttgatttgtgacattaattatgtaggcattatgggctatgagccccttcac 740

                                                                       
Query: 541 tgcagcttaaaggcaaactattttgcagagatatttccgtcttcctattaggtacccatt 600
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 tgcagcttaaaggcaaactattttgcagagatatttcagtcttcctattaggtacccatt 800

                                                                       
Query: 601 ctatatacattatggaccactgacatctcatccagagggtgagagcaagtggtttccact 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 801 ctatatacattatggaccactgacatctcatccagagggtgagagcaagtggtttcccct 860

             
Query: 661 gg 662
           ||
Sbjct: 861 gg 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)