BAC Information

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BAC

Clone NameMSMg01-296P17
Chromosome9 (Build37)
Map Location 85,684,726 - 85,685,041
singlet/doubletsinglet
Overlap geneEG434426
Upstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik
Downstream gene9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35, Snap91
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296P17.T7 (MSMg01no296_p17.b1)MSMg01-296P17.TJ (MSMg01no296_p17.g1)
ACCAG424445AG424446
length757758
length of high quality
(start - end)
320 (45 - 364)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no296_p17.b1 PHD_FILE: MSMg01no296_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:19 2005CHROMAT_FILE: MSMg01no296_p17.g1 PHD_FILE: MSMg01no296_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCACTGAGCTCCTTCCTGCACTTGTATGCAGAGAAATCAAGCTG
GAACTAGACCGGAAGCTTCCTCTCCCAATGCTAGCTTTCATAGCACTGGA
AAGTGCAGCGGGAACTGCTGAGGGCGAAAACTCAACCATAATAGCAACCC
ATCAGGCCAGACTTGCCAGCTAGTGCAACATTGATAAGCTATGTGGAAGG
AACAGCCACTTCCTGACTAGATTTGAGGCCCACCATGCAGAACCTAGTGA
AAGACCATGGCTTTGGATGTCATAGACCCTCAGGGCCAACAAAACTACTA
TTGTTTTGTTCATTGTAATGATGCCACACCCCCCCTCTAAGTATTTATAT
TTAAGATACATAGATGACCGCTCTTCTCAAAAAAAGAAAGAGAAACCTGT
TTCCCATAGGCAATAGTTGGTGCATAGACCCAAAAACTGATCCAATATGC
TAAGAATAAGTGACCGTTAATTACTTGTCCCTTAATAGGGCTCTGAAGCC
CCCTCTCTCACCAATAAGGCTCAGGAAAGATCACAAAAGAGAGAGCACGA
AGGGCTGGAGAGATGGCTCAGTGGTTAAGAACACCAACTGCTCTTCCAAA
GGTCCTGAGTTCAAATCCCAGCAACCACATTGTGACTCACAACCATCCGT
AATGAGATCTGACGCCCTCTTCTGGTGCATCTGAAGACAGCTACAGTGTA
CCTTAAN
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTT
TAATGGGGTTATTTAATTTTCTGCAGCAAAGAATCTTTTATCACGTGTCC
TTTTAGGTATTAGTTTTAGTAGAACATCCTCTCTCCTGTGTCTGTCTTAG
CCTTTCACACCTGTGTCCACTTTAACAAAATGTTTTTTCATGAGTTTGCC
CCAGAAAAACACCATCCAACTGACTTTCCAAAGAGCCCTTAAGTTTCCAC
TTCAAAGGCCCATGAGATCTTGTCTCAAAAAGAAGTTCTTCCCTGGTAAA
TGTGTATGAATTGTATTTATTTTATTCACACCCCCCGGCATATAGTAAGC
ACAAACTATATTAACCATCACCCTGAAGATCATCAAACTAATAATATATT
TATGTGACTCCCAGGTGCACATAAAAGTCTTTTATATTTCAGATTCCTAT
AAGTTCAATGGGAAATTAATCATTTAAATGCGTATATGGCCTAAAGAACT
TTATAAAAATAGTCAGATGTTTCATTTTGCTTTTTATTACTCAATATATA
CACTTATGTGTGAGAGAGTATATACACGCATGTGCACATGTAGAGGCCAG
AAGAAGGCTTGAAGTCTTTTCCTCTCTCACTTGGAGGCAGCGTCTTTCCT
TGAACCCAAGCCTCTGTTTTCATGGTTAAGCTAAAAGCTAACAGCCAGGA
TGATCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_p17.b1 MSMg01no296_p17.b1 CHROMAT_FILE:
MSMg01no296_p17.b1 PHD_FILE: MSMg01no296_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:19 2005
         (320 letters)



>mm_chr9_85684382_85685101
          Length = 720

 Score =  520 bits (269), Expect = e-152
 Identities = 305/317 (96%), Gaps = 2/317 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactcactgagctccttcctgcacttgtatgcagagaaatcaagctggaactaga 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gaattcactcactgaactccttcctgcacttgtatgcagagaaatcaagctggaactaga 601

                                                                       
Query: 65  ccggaagcttcctctcccaatgctagctttcatagcactggaaagtgc-agcgggaactg 123
           |||| |||||||||| || ||||||||||||||||| ||||||||||| | |||||||||
Sbjct: 600 ccggtagcttcctcttccgatgctagctttcatagcgctggaaagtgcta-cgggaactg 542

                                                                       
Query: 124 ctgagggcgaaaactcaaccataatagcaacccatcaggccagacttgccagctagtgca 183
           | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ccgagggcgaaaactcaaccgtaatagcaacccatcaggccagacttgccagctagtgca 482

                                                                       
Query: 184 acattgataagctatgtggaaggaacagccacttcctgactagatttgaggcccaccatg 243
           |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 481 acattgatgagctatgtggaaggaacaaccacttcctgactagatttgaggcccaccatg 422

                                                                       
Query: 244 cagaacctagtgaaagaccatggctttggatgtcatagaccctcagggccaacaaaacta 303
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cagaacttagtgaaagaccatggctttggatgtcatagaccctcagggccaacaaaacta 362

                            
Query: 304 ctattgttttgttcatt 320
           |||||||||||||||||
Sbjct: 361 ctattgttttgttcatt 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)