Query= MSMg01no297_c18.b1 MSMg01no297_c18.b1 CHROMAT_FILE:
MSMg01no297_c18.b1 PHD_FILE: MSMg01no297_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:33 2005
(657 letters)
>mm_chr9_118263467_118264523
Length = 1057
Score = 901 bits (466), Expect = 0.0
Identities = 590/662 (89%), Gaps = 53/662 (8%)
Strand = Plus / Plus
Query: 1 agggcatcagatccccggatctggagttacaggtagtttgagccacctgacatggtgcta 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agggcatcagatccccggagctggagttacaggtagtttgagccacctgacatggtgcta 303
Query: 61 gggtttgaactcaggacctctgcaatagcagcccacgctct---aactgctgagctatcg 117
||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct: 304 gggtttgaactcaggacctctgcaaaagcagcccgcgctctacaaactgctgagctatcg 363
Query: 118 ttccagacccaacatttctttcttacatctttaaaaccttagtgagaccaggtggtggtg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttccagacccaacatttctttcttacatctttaaaaccttagtgagaccaggtggtggtg 423
Query: 178 gcatacacttttaatcccagcactctggagggagagacaggttgatctctgtgagtttga 237
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 424 gcatacacttttaatcccagcactctggaggcagagacaggttgatctctgtgagtttga 483
Query: 238 ggccagcctggtctatataagttccaggacagccagggctacacagaaaccctgtctaaa 297
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggccagtctggtctatatgagctccaggacagccagggctacacagaaaccctgtctaaa 543
Query: 298 aataaaaat--aaaaaaacactgccacctccgccaccgccgccgccgccgccgctgccac 355
||||||||| ||||||| | | || |||||||
Sbjct: 544 aataaaaataaaaaaaaaaa-----a-------ca------------------ctgccac 573
Query: 356 cgccgccaccaccgccgccaccaccgccatcatcatcatcatcatcgagcctgtgtagga 415
|||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 574 cgccgcca---------ccaccac---------catcatcatcatcgagcctgtgtagga 615
Query: 416 ggaatgactcagcatgtcctgactggctcctgaaggggttcacacacgcacagcaattgc 475
||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||
Sbjct: 616 ggaatgactcagcatgtcctgactggctcttgaaggggttcacacatgcgcagcaattat 675
Query: 476 ttctgcatttactaatcctcaaacttgcctgaaatccaaagacaaatgacagcagagggt 535
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttctgcgtttactaatcctcaaacttgcctgaaatccaaagacaaatgacagcagagggt 735
Query: 536 gtggccagaccaaccaatcagatggtgccaactacatggcctgagaagttgtggaccaat 595
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 736 gtggccagaccaaccaatcagatggtgccaactacatggcctgagaagtcgtggaccaat 795
Query: 596 aaggcacaggtggagggtataaaggcactcccagctccacatctcactgggcttctggag 655
|||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 796 aaggcacaggtggagggtataaaggcactcccagctccgcgtctcaccaggcttctggag 855
Query: 656 tc 657
||
Sbjct: 856 tc 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_c18.g1 MSMg01no297_c18.g1 CHROMAT_FILE:
MSMg01no297_c18.g1 PHD_FILE: MSMg01no297_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:33 2005
(563 letters)
>mm_chr9_118424325_118425287
Length = 963
Score = 938 bits (485), Expect = 0.0
Identities = 497/501 (99%), Gaps = 1/501 (0%)
Strand = Plus / Minus
Query: 64 atttacttgctaaactcatttattagctctaatagttttttactggaatccttgtaactt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 atttacttgctaaactcatttattagctctaatagttttttactggaatccttgtaactt 904
Query: 124 tctatatgtaagtcctctgcaaaggacatgattttatgccccctttagcctacatctttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 tctatatgtaagtcctctgcaaaggacatgattttatgccccctttagcctacatctttg 844
Query: 184 ttatgtgtcctgcccagcacccacactaaaaagtcaaagaaaataacacacacttgcctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ttatgtgtcctgcccagcacccacactaaaaagtcaaagaaaataacacacacttgcctc 784
Query: 244 gcctgctcttaagaga-aaaaaaaaaaaaaaacacttaaatatagttgttttggtttgtt 302
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gcctgctcttaagagagaaaaaaaaaaaaaaacacttaaatatagttgttttggtttgtt 724
Query: 303 tgtttttgaggtggggtctctgtgatgccctagacggtctcaaaaatcctggctcaaatg 362
|||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 723 tgtttttgaggtagagtctctgtgatgccctagacggtctcagaaatcctggctcaaatg 664
Query: 363 gtatagtaggtatctttagttgattttaaacctccatatctgttttacttccaagttgtt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gtatagtaggtatctttagttgattttaaacctccatatctgttttacttccaagttgtt 604
Query: 423 gctataacaacgaattcttctctccttctgaagtgctgctgagcactgagccctcaagag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gctataacaacgaattcttctctccttctgaagtgctgctgagcactgagccctcaagag 544
Query: 483 aaagctgctcacaagagacaaccatcccaacagataagcaaactgcaatttccacacatg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aaagctgctcacaagagacaaccatcccaacagataagcaaactgcaatttccacacatg 484
Query: 543 atgcacttacgtgcatgcaag 563
|||||||||||||||||||||
Sbjct: 483 atgcacttacgtgcatgcaag 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
