Query= MSMg01no297_f24.b1 MSMg01no297_f24.b1 CHROMAT_FILE:
MSMg01no297_f24.b1 PHD_FILE: MSMg01no297_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:48 2005
(512 letters)
>mm_chr9_120799208_120800120
Length = 913
Score = 859 bits (444), Expect = 0.0
Identities = 490/508 (96%), Gaps = 7/508 (1%)
Strand = Plus / Minus
Query: 1 aattaacacaaagccaaatgaggagaaaactatcagtccagtccccacaggctcctctta 60
||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct: 660 aattaacacaaagccgaatgaggagaaaactatca--ccaatccccacaggcaactctta 603
Query: 61 ccccaagccatttgtgtctctggctgctgccgtctggcatgggcaccagactccagcttc 120
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 602 ccccaagccatttgtgtctctggctgctgccatctagcatgggcaccagactccagcttc 543
Query: 121 ttcattgcttcagtgctggcccacagcagcaggtttccaggatatttacaggcttcagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttcattgcttcagtgctggcccacagcagcaggtttccaggatatttacaggcttcagtc 483
Query: 181 tctccctggaaccgtcataagttagttccatcctgttctgagactcccggtgcctcccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tctccctggaaccgtcataagttagttccatcctgttctgagactcccggtgcctcccac 423
Query: 241 taaacagttactatgttccttggctcttctgtgtacagagggacactgtggactccccag 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 taaacagttactacgttccttggctcttctgtgtacagagggacactgtggactccccag 363
Query: 301 gctctgggaccctaagctccatttata---ttacatacaatctattggttttattcttct 357
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 362 gctctgggaccctaagctccatttatatagttacatacaatctattggttttattcttct 303
Query: 358 gtacaccctaacattgcccttagctacaagcctaaaatccttcttattctatattcttgt 417
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 302 gtacaccctaacattgcccttagctacaagtctaaaatccttcttattctatattcttgt 243
Query: 418 ctatacccattttctaaaagctgtatatatatacacacacacacgtgtgtgtgtgtgtgt 477
||||||||||||||||||||| |||||||||| | |||||||||||||||||||||| |
Sbjct: 242 ctatacccattttctaaaagc--tatatatatatatacacacacgtgtgtgtgtgtgtat 185
Query: 478 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 505
||||||||||||||||||||||||||||
Sbjct: 184 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 157
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space: 453306
Effective search space used: 453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_f24.g1 MSMg01no297_f24.g1 CHROMAT_FILE:
MSMg01no297_f24.g1 PHD_FILE: MSMg01no297_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:48 2005
(670 letters)
>mm_chr9_120612157_120613225
Length = 1069
Score = 1180 bits (610), Expect = 0.0
Identities = 655/672 (97%), Gaps = 5/672 (0%)
Strand = Plus / Plus
Query: 1 cagagaaggactaagaatttaggtttttgagtatgtttctagaacattcatgtgcgtgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 cagagaaggactaagaatttaggtttttgagtatgtttctagaacattcatgtgcatgga 260
Query: 61 cacacaggagcacgggtattgtccgcacaatcaacatccagtttagagagatggtctcat 120
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacaggagcatgggtattgcccgcacaatcaacatccagtttagagagatggtctcat 320
Query: 121 atctaaggtcagacacccatgttccctgtcacccaatgcctggagctgcacaagggatgt 180
||||||||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct: 321 atctaaggtcagacatccatgttccctgtcagccactgcctggatctgcacaagggatgt 380
Query: 181 gagaaccgagccagctgatccctctgaaagccatgggcaggtctccggttgtctgagcac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gagaaccgagccagctgatccctctgaaagccatgggcaggtctccggttgtctgaacac 440
Query: 241 agactctctgatg--ttttaatgagcttcaagccacaatgaaaagccaagtagaagagag 298
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agactctctgaggcat---aatgagcttcaagccacaatgaaaagccaagtagaagagag 497
Query: 299 tctggtagttaaatgaggccaaagtgactggtgtgtggcgggacagctggcctcacgaag 358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tctggtagttaaatgaggtcaaagtgactggtgtgtggcgggacagctggcctcacgaag 557
Query: 359 agactcccatttcatccttaatttgcatatggtaaagactgattctctcccattaattca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agactcccatttcatccttaatttgcatatggtaaagactgattctctcccattaattca 617
Query: 419 aatgtatgacacataggtgacatttaaggcgcaatggagcatttaatagacaaacatttt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aatgtatgacacataggtgacatttaaggcgcaatggagcatttaatagacaaacatttt 677
Query: 479 tctcgattagtattcacttgacctggtgacccaaagatgaagccttgctctcatttcctt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tctcgattagtattcacttgacctggtgacccaaagatgaagccttgctctcatttcctt 737
Query: 539 cctatctgtggaaggctgccaaaccagcagcagaaaattagccagactgtgccagagccc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cctatctgtggaaggctgccaaaccagcagcagaaaattagccagactgtgccagagccc 797
Query: 599 agccatttggagggccagggctcacaggggtgacgagagtagaacgaggcaggcttttgt 658
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 798 agccatttggagggccagggctcacaggggtgacgagagtggaacgaggcaggcgtttgt 857
Query: 659 ctcttttatgaa 670
||||||||||||
Sbjct: 858 ctcttttatgaa 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1069
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1059
Effective search space: 698940
Effective search space used: 698940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
