Query= MSMg01no297_g02.b1 MSMg01no297_g02.b1 CHROMAT_FILE:
MSMg01no297_g02.b1 PHD_FILE: MSMg01no297_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:49 2005
(673 letters)
>mm_chr9_85727147_85728215
Length = 1069
Score = 1191 bits (616), Expect = 0.0
Identities = 655/670 (97%), Gaps = 6/670 (0%)
Strand = Plus / Plus
Query: 1 ggcatcatggatgaattttggcataactatgcctcgtgcctatggttgcagatggtgaga 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcatcatggatgaattttggcatgactatgcctcgtgcctatggttgcagatggtgaga 260
Query: 61 agcctttcagtgtctgaagaattggacagagctgtagggacatgtggtgctcacactcag 120
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 261 agcctttcagtgtctgaagaattggacagagttgtagggtcatgtggtgctcacactcag 320
Query: 121 gcagactgcattacagctttccggtcactgtctatatatggagccctgccctggaatgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagactgcattacagctttccggtcactgtctatatatggagccctgccctggaatgag 380
Query: 181 cgtggactgttcagtgtctgggcctcattggttccacaccacggcaatacaggcttctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtggactgttcagtgtctgggcctcattggttccacaccacggcaatacaggcttctta 440
Query: 241 gtaaatatctttgcatcagtagctcttggccaaagcctgctggggtcatgggtccctcca 300
||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 gtaaatatcactgcatcaatagctcttggccaaagccttctggggtcatgggtccctcca 500
Query: 301 gcagctatgattggagttcagtaaatgcaacctactctgtagtgcacctgattttcctca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagctatgattggagttcagtaaatgcaacctactctgtagtgcacctgattttcctca 560
Query: 361 gcataagtcacactgtgcagccac-gtggcttgaccctagattgacctcacgctccctcg 419
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 561 gcataagtcacactgtgcagcc-ctgtggcttgaccctagattgacctcacgctccctcg 619
Query: 420 ttaatagccctgagccttttctttcactgccatgaacatatgataaatttctattccaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttaatagccctgagccttttctttcactgccatgaacatatgataaatttctattccaaa 679
Query: 480 atacatggtcctttggctgttatatggaagacccaaactaaatcagataaaattctcaat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atacatggtcctttggctgttatatggaagacccaaactaaatcagataaaattctcaat 739
Query: 540 atgtcagatctgagcacttcagacaaccccagggccatcatattcatcaatgtacttcag 599
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 740 atgtcagatctgagcacttcagacaaccccagggccatcatattcat----gtacttcag 795
Query: 600 cttgtggagtcagatttgcagaatacattaaatatgcactgaaatctctgatggacacat 659
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 796 cttgtggaatcagatttgcagaatacattaaatatgccctgaaatctctgatggacacat 855
Query: 660 actagacccc 669
||||||||||
Sbjct: 856 actagacccc 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1069
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1059
Effective search space: 702117
Effective search space used: 702117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_g02.g1 MSMg01no297_g02.g1 CHROMAT_FILE:
MSMg01no297_g02.g1 PHD_FILE: MSMg01no297_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:49 2005
(585 letters)
>mm_chr9_85902842_85903826
Length = 985
Score = 1023 bits (529), Expect = 0.0
Identities = 571/595 (95%), Gaps = 16/595 (2%)
Strand = Plus / Minus
Query: 1 agaggaacgcaatgaggatgatgtatgaatctaactaagaacaactcttgcgggaaggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 agaggaacgcaatgaggatgatgtatgaatctaactaagaacaactcttgcgggaaggtc 656
Query: 61 aaaagtactggagaaggaaggtgagggaacatttaataactgtttttaaaatactaaatt 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 655 aaaagtactggagaaggaaggtgaaggaacatttaataactgtttttaaaatactaaatt 596
Query: 121 tttacatgtaagagattaaatgtgtttaagtctgaaggagttaggatcgacagaaagaac 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 595 tttacatgtaagagattaaatgtgtttaagtctggaggagttaggatcgacagaaagaac 536
Query: 181 tcccctttgtgaaagataaataggctacaaaaaattagagaacctgctccacagaatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tcccctttgtgaaagataaataggctacaaaaaattagagaacctgctccacagaatttg 476
Query: 241 aaaaatgaagttattttcatttattttagctcatcgttctttgtgaaggtcagggaaggg 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aacaatgaagttattttcatttattttagctcatcgttctttgtgaaggtcagggaaggg 416
Query: 301 gccacacagcatttcattctccctcggctctgagattcttggattagctttttccgtgaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 415 gccacacagcatttcattctccctcggctctgagattcttggattagctttttccgggaa 356
Query: 361 tcagtgatggatccctccatagttaagtgcccttgtgccctgagagcttgaggtgatgtt 420
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 355 tcagtgatggatccccccatagttaagtgcccttgtgccctgagggcttgaggtgatgtt 296
Query: 421 ccaagctgaaattcctttctgttagattgaggttagtcttgggtttaataagtcttcttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ccaagctgaaattcctttctgttagattgaggttagtcttgggtttaataagtcttcttt 236
Query: 481 ttaataagacagtgatgtgaccctagactactgca----------------tctctctct 524
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 235 ttaataagacagtgatgtgaccctagactactgcatctctctctctctctctctctctct 176
Query: 525 ctctctctctctctctctctctctctctatgtgtgtgtgtgtgtgtgtgtttgtg 579
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 175 ctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtg 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
