BAC Information

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BAC

Clone NameMSMg01-297G05
Chromosome9 (Build37)
Map Location 110,831,730 - 110,832,002
singlet/doubletsinglet
Overlap genenone
Upstream geneMtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590
Downstream geneTdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac, 4930545L08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297G05.T7 (MSMg01no297_g05.b1)MSMg01-297G05.TJ (MSMg01no297_g05.g1)
ACCAG424732AG424733
length729728
length of high quality
(start - end)
248 (44 - 291)383 (82 - 464)
definitionCHROMAT_FILE: MSMg01no297_g05.b1 PHD_FILE: MSMg01no297_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:49 2005CHROMAT_FILE: MSMg01no297_g05.g1 PHD_FILE: MSMg01no297_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATAGGTACAGAATACGCGGAATTCAGCCAGGCTTTCCGATGGGAA
GATTGGGCAAGGACTGGCCTCCAGGGGAAAGGTAACCACAGCAGAACGCG
GGCTGTCAAGAGCACATCCACAGCTGCCCTCAGGGACCAAGAGAACTATC
TCGGAGCTCTGGAGAGGCAGAGCCAGAATTGCTGAAAGAGGCGTTGGCTG
GGGAAAACATGTGGCTGGGAACAGATGGAGACCACCGACTGGCGCCAAGC
CGGTAATAGCTTGGATAGTTCTTTAATTATTACACGCAACATGTTCTGAT
GTCAGACGCCCTGCAACAGGGGTTACTACCAGTTGTGAACTGCCATATAG
GCGTTGGATATTGAACCCAGGCTCTCTGGAAGAGTATTCAGTGCTCTCGC
CCCCCAAGCCGTCTCTCCAGTCCCTTATTGTTTCTTCCATCGACAAACAT
CTCATACTAATCACAGGCTGGTCTTATATGTTCGCGTACTGTTTGTGAAG
CGTGACTTTGAGGTCTTTTTGCGTTGCGTTTGTCCTGCCTTGCCCCGCTT
TTGACATTCTGTCTCCGTGTGTCCCCTCCGCCCGCCTTGGTTTATAGTTC
TTATTGCTTGCTAAGCAGACTCCATTGTATGTGTGTTATCTTATCTCTCA
GCTGACGGGGGGGTTTTAGCCTTGTTTTTCCCCCCGATGCCCCTCGTTTC
TCTGGATCGACCATTTATCTGGGTTGTTG
NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCATTGAGAGACCTT
GTCTCAAAAAAGGTGGGACAGGGAGTGGCACCTGATGAACCATGCCCAAA
GTTGTCTCTGGCCTCTGTATTCACATGCACACACATGAACACACACACAC
ACAAGCACACACAAACACAGGCACACACACATGCATACACATGAATACAC
ACAGGCACACATACACACACATACAGGCACACATCTAAAAAAGAGGTAAG
TATGGTCCATGCTGCCACTGGGGACCATACTGAGGTCCATGCTGCTGCTG
GCTAGCTGTTATGGGCAGCAAAGCGTTTTTTGTAGAGGTATAGATGACTG
CAGATTCACAGTTGAGAATGACAGCCATAGAAGGTTTCTATAACAACCTC
CCCCTCTTCCCAAACAAACAGTCAAGACAGGAAGCTATTGAAGAGAGTCC
TTAAAAATTATGATTGGGACACTGAAGTGTAGCTCTTCATGCCTAATTGC
TTCTGGCAGGCGTGGGGAGAGGGGATGTATTATGCCCATCATTTTTTCCC
CTCTTTTTTTTTTTCTCTCCACTTTCTTTTTTTTCCCCCTCCCCTCTTTT
TTTTTCCTCCTCTTATATCTTCTCCCTTTTTCTTCTTCCTCCCCCTTCCC
CCTATTCCCCTTTTCCCCCCCCCCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_g05.b1 MSMg01no297_g05.b1 CHROMAT_FILE:
MSMg01no297_g05.b1 PHD_FILE: MSMg01no297_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:49 2005
         (248 letters)



>mm_chr9_110831530_110832177
          Length = 648

 Score =  366 bits (189), Expect = e-106
 Identities = 240/273 (87%), Gaps = 25/273 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggaagattgggcaaggactggcctccaggggaaaggtaaccacagcagaacgcgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgggaagattgggcaaggactggcctccaggggaaaggtaaccacagcagaacgcgggc 260

                                                                       
Query: 61  tgtcaagagcacatccacagctgccctcagggaccaagagaactatctcggagctctgga 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcaagagcacacccacagctgccctcagggaccaagagaactatctcggagctctgga 320

                                                                       
Query: 121 gaggcagagccagaattgctgaaagaggcgttggctggggaaaacatgt----------- 169
           |||||||||||||||||| ||||||||| ||||||||||||||||||||           
Sbjct: 321 gaggcagagccagaattggtgaaagaggagttggctggggaaaacatgtagtctctgtcc 380

                                                                       
Query: 170 --------------ggctgggaacagatggagaccaccgactggcgccaagccggtaata 215
                         ||||||||||||||||||||||||||||||  ||||||||| ||||
Sbjct: 381 caggctatgtactaggctgggaacagatggagaccaccgactggtaccaagccggcaata 440

                                            
Query: 216 gcttggatagttctttaattattacacgcaaca 248
           |||||||| ||| ||||||||||||||||||||
Sbjct: 441 gcttggattgttttttaattattacacgcaaca 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)