Query= MSMg01no297_h15.b1 MSMg01no297_h15.b1 CHROMAT_FILE:
MSMg01no297_h15.b1 PHD_FILE: MSMg01no297_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:56 2005
(663 letters)
>mm_chr9_70446675_70447737
Length = 1063
Score = 1156 bits (598), Expect = 0.0
Identities = 604/606 (99%)
Strand = Plus / Minus
Query: 2 gaattcattctcttgctttcaatggaagtaaagaatgaggagtagggagggatgacacag 61
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaattcattctcttgctttaaatggaagtaaagaatgaggagtagggagggatgacacag 547
Query: 62 aagcagtagctagaaaatgctctttgaaaaaagacacgtaagatgcacctacccctcgca 121
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 546 aagcagtagctagaaaatgctcttcgaaaaaagacacgtaagatgcacctacccctcgca 487
Query: 122 gggctcagctgatttctgtgaaataaactgttttaaatgttaattttgctaagagcacct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gggctcagctgatttctgtgaaataaactgttttaaatgttaattttgctaagagcacct 427
Query: 182 ctaaaaattatgtcttaaatttcaagtttcacttttggaaactactcctgaaaagacatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctaaaaattatgtcttaaatttcaagtttcacttttggaaactactcctgaaaagacatt 367
Query: 242 gaatataggtgggaaagtaaacaatgtttctgactcaatgattcagtattatccagtgtt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gaatataggtgggaaagtaaacaatgtttctgactcaatgattcagtattatccagtgtt 307
Query: 302 taatctcaaattcattgtaacacaagtgtagtgtcatcgttggattaaaacgttggatgt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 taatctcaaattcattgtaacacaagtgtagtgtcatcgttggattaaaacgttggatgt 247
Query: 362 ttttgttaatatactttaaactgtaaccagtgaataacaccgtagtattttttattatag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttttgttaatatactttaaactgtaaccagtgaataacaccgtagtattttttattatag 187
Query: 422 attatattttatttcaataaactttgatatttagactgaacattctctctgtgtgtcaac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 attatattttatttcaataaactttgatatttagactgaacattctctctgtgtgtcaac 127
Query: 482 tcatcaccctaaactgcagcctgtatggctgggaacactgacctgagacttatccttaag 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tcatcaccctaaactgcagcctgtatggctgggaacactgacctgagacttatccttaag 67
Query: 542 atcagtgtttgacataagggacagttaataaacaactctaagctacagagtggtgacctc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 atcagtgtttgacataagggacagttaataaacaactctaagctacagagtggtgacctc 7
Query: 602 agctct 607
||||||
Sbjct: 6 agctct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_h15.g1 MSMg01no297_h15.g1 CHROMAT_FILE:
MSMg01no297_h15.g1 PHD_FILE: MSMg01no297_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:56 2005
(505 letters)
>mm_chr9_70264565_70265469
Length = 905
Score = 868 bits (449), Expect = 0.0
Identities = 491/509 (96%), Gaps = 11/509 (2%)
Strand = Plus / Plus
Query: 1 tccaggatcagccaggactacacaaagaaaccctgtctcgaaaaccaaaaaaaaaaaaaa 60
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 tccaggatcagccaggactatacagagaaaccctgtctcgaaaaccaaaaaaaaaaaaaa 264
Query: 61 aaaaaaaaaa--aggaggaggacaatgaagaagaagaggaagaggaagaggaagaagagg 118
|||||||||| |||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct: 265 aaaaaaaaaaggaggaggaggacaat---gaagaagag---gaggaagaggaagaagaag 318
Query: 119 aggaggaggaggaggaagaagacaacgacgacatgttctcaaccactgagtcatctctcc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aggaggaggaggaggaagaagacaacgacgacatgttctcaaccactgagtcatctctcc 378
Query: 179 agcctctaggtcatttatatggactgagctcttaggcccatgttttgtggtctcagtttt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agcctctaggtcatttatatggactgagctcttaggcccatgttttgtggtctcagtttt 438
Query: 239 gttagaaaatagagaaaaagcagtcagccatggagtagaggagaccagaaacagggaagc 298
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 439 gttagaaaatagagaaaaagcagtcagccatggagtagaggagaccagaaataggggagc 498
Query: 299 actaaggtcataggaagaattctatttcttctcttatataacactcttacttttcaacgt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 499 actaaggtcataggaagaattctatttcttctcttatataacactcttacttttcaatgt 558
Query: 359 tggggattgaagcccgggcctcttaacatgctaagcacagtttctacagctgagctactg 418
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 559 tggggattgaagcccgggcctctta-catgctaagctcagtttctacagctgagctactg 617
Query: 419 cccatcttgatggatagacagatgccttttttctttgattcagttttatgtaatagtcgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cccatcttgatggatagacagatgccttttttctttgattcagttttatgtaatagtcgg 677
Query: 479 ggggggggggg--agccacatatcctggg 505
||||||||||| ||||||||||||||||
Sbjct: 678 gggggggggggggagccacatatcctggg 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
