BAC Information

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BAC

Clone NameMSMg01-297K03
Chromosome9 (Build37)
Map Location 123,894,128 - 123,894,513
singlet/doubletsinglet
Overlap genenone
Upstream geneKif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1
Downstream geneCcr3, Ccr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297K03.T7 (MSMg01no297_k03.b1)MSMg01-297K03.TJ (MSMg01no297_k03.g1)
ACCAG424907AG424908
length717723
length of high quality
(start - end)
383 (25 - 407)619 (77 - 695)
definitionCHROMAT_FILE: MSMg01no297_k03.b1 PHD_FILE: MSMg01no297_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:07 2005CHROMAT_FILE: MSMg01no297_k03.g1 PHD_FILE: MSMg01no297_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:07 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ACTCCTATAGGGTGCGGATACGCGGAATTCCTAGTAGGATAATCCCTTAT
TTCACAGGTTAAAACTCAGGGTACTAGGTTGTTTGTTTGGCTTAGGCTGA
TCCATATCACATGGCCTTTATATGGTACAGGTAGATTTACAGTTAACTCA
ACAGCCCTAGTGAGCACCATGAGATAGCTAGGAGGAGGGTATGACCTGGA
GACAGAAATAGAGAATGGGCTCAGGGAGTAAGAGACGCCTGTATCCAACA
GGAGACAGCACACAGGAGCTAGATAGAAATTGAGACTCTGCTGAAATGGG
TTCTGAATTATTGCTATTGTTTTATGTATTTATTATTATTATTATTATTA
TTATCTTAAATCGGGATTTATTTGAGACAAACAAAGGATCAATAGATAGC
TTGCCACCGTAGGACTCCTTCCACACAGGGGTAATTTGGTCCTCGCCTAC
TTTTCCCGACTTACCCCCTTCGCAAAAATTTTCCCCCCTCACGGGGCGCA
CTCTTTTCTCTCTTCTCTTCCCCGTTTCTTTTTTCTTCCCTATCCCCTTT
CTTTCCTTTTTCCTTCCTATTCTCCCTCATCCCTCTGTTTCTTTTCCCCT
CTCCCCTACCTTCCCGTTTTCTTATCTCCTTTCTTTCTTAAGTTCTGACG
GCCCTCTTTTTACATGTTCTCTCCCCTCTATCCTCGCGTTACCTTGCTCC
CCTCCTTTCGTCGGTCG
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTAT
ATACATTGGATATTAGTCCCCTATCCGATTTGGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGCCTTTTTTAGACAGCCAATCTTAATGGAAACAC
ATATAAACATTTTTGCTGTAACTTCTTACTCATTTATGATCTGAATTTAG
GTTTGGGCTTCTGAACTTTTGAAAAAAGGTGCTTGTAATACTTTGTGATC
AATTATCTTGAGAAAGTACAAGAACAAGGAATGATGACAATAAGAGCAGA
GAGGGAAGACAGACTTTTTCTTAACATGAGAAAGAAGAATTTGTTGTTGT
TGTTGTTGTTCATTTTTGTTTTTTGTTTTGTTTTGTTTCTTCTTAACAGC
AGTTTTATTCTTGCTGACAAGGACATGGATTTTTCTTATTCAATAAAAAG
ATGGAAGTTTTTTTTTTCTTTGAGCAGTAAAAATTGGAGCTTATTTTTTC
ATGCAGAATGATTGAGTACTTTCTGTGCTGGTGCTTGCTTAATGAACCCT
ACTCATTGGGGGCTTTTGCTCCATTCACCGTGTGTGTGTGTGTGTGTGCG
CGTGTGTGTGTGTGTGTGTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_k03.b1 MSMg01no297_k03.b1 CHROMAT_FILE:
MSMg01no297_k03.b1 PHD_FILE: MSMg01no297_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:07 2005
         (383 letters)



>mm_chr9_123893928_123894710
          Length = 783

 Score =  692 bits (358), Expect = 0.0
 Identities = 378/386 (97%), Gaps = 3/386 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcctagtaggataatcccttatttcacaggttaaaactcagggtactaggttgttt 60
           ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 201 gaattcctagtaggataatccattatttcacaggttaaaactcaggttactaggttgttt 260

                                                                       
Query: 61  gtttggcttaggctgatccatatcacatggcctttatatggtacaggtagatttacagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttggcttaggctgatccatatcacatggcctttatatggtacaggtagatttacagtt 320

                                                                       
Query: 121 aactcaacagccctagtgagcaccatgagatagctaggaggagggtatgacctggagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactcaacagccctagtgagcaccatgagatagctaggaggagggtatgacctggagaca 380

                                                                       
Query: 181 gaaatagagaatgggctcagggagtaagagacgcctgtatccaacaggagacagcacaca 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 gaaatagagaatgggctcagggagtaagagatgcctgtatccaacaggagacagcacaca 440

                                                                       
Query: 241 ggagctagatagaaattgagactctgctgaaatgggttctgaattattgctattgtttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 ggagctagatagaaattgagactctgctgaaatgggttctgaattattgctattgttcta 500

                                                                       
Query: 301 tgtatt---tattattattattattattattatcttaaatcgggatttatttgagacaaa 357
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtattatttattattattattattattattatcttaaatcgggatttatttgagacaaa 560

                                     
Query: 358 caaaggatcaatagatagcttgccac 383
           ||||||| ||||||||||||||||||
Sbjct: 561 caaaggaccaatagatagcttgccac 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)