BAC Information

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BAC

Clone NameMSMg01-298A18
Chromosome9 (Build37)
Map Location 33,254,276 - 33,254,625
singlet/doubletsinglet
Overlap genenone
Upstream geneFli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298A18.T7 (MSMg01no298_a18.b1)MSMg01-298A18.TJ (MSMg01no298_a18.g1)
ACCAG425204AG425205
length708748
length of high quality
(start - end)
575 (46 - 620)354 (66 - 419)
definitionCHROMAT_FILE: MSMg01no298_a18.b1 PHD_FILE: MSMg01no298_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:38 2005CHROMAT_FILE: MSMg01no298_a18.g1 PHD_FILE: MSMg01no298_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGCCGCGGA
ATTCCAGGTTTCTCGCACATTTAATTGAAGATGACATATGGTGTATGTTG
GGAGCCTATCAAAACTTGGGTACCCACAGATGTATGGGCCCATATCTGGG
GACTCTGTATGATTCTATTGACCTTCATGTCTATTTGTATCAGGATCATG
CCATTTTTATTATCATAAATCTTTGGTGTTAGTTTTGGTAATAACTCCTG
CAGTATCCGTTGCTTGATCTTTTATTCTTCCATATAAATTTGGAGGTTTT
TTTTTTTCTTTCTGTATTTGTGAGGAATGGTTCTAGAACTTTGAATACAT
TTGAATGTACAGATTGCTCTCTTTTTTCTTTCGTATGATAGCCATTTTCA
AATGTTTAATTCTAACCCATGAGCATGGGAGGTCTTTCTACTTTCTAATG
TCTTTTAGAAATTTTTTTCTCAGTGACTTANAAGCTTCATTGTAGAGGTC
TTTTGTTTCATTAGTTATAATCATTCTTTGTCATTATATCTGGGTTATTG
TGAATGGGATATTTTCTTGATTTCTTTTTCAGTGTATTTATCATAGGTAT
AGAGGAAAGGTAACTTTAACATTGTTAAAATTGTGTATTGTTATTCGCTA
AACATATTCCTCAACATCAAGAGTTTTTTGTTGTGGTCCCATAAAATACA
TGATATTG
CGATGATGTGGGAGGCCTGGAGGCCGCCTGTTCACAGAGGGAGGTGAACT
ATAGAATTTCAGCGGAATTCTGCTGAATGAATGAATACTGACTCGCCACA
GGACGAACTGACAGATGAATGAGGGAGAGAATGGAGAAATGAGTGGATTG
CAAGAACTTCTTGTTTTTTAACTAATACGGAGGCTTTCAAGTTGTTGGAA
CTGTTAGTTCAGTTGAGGTTCAGTCTTCTTTGAAGTTATCTCTTTTTCAA
GGTAGCTAAGATTGTATGGCTGGATATTAATTTCAGGTGCGTGGATTACT
TACAAAAAGATTAACCCAAGGCTAGTTTTTCCTTTTTCGTACTTCCAGTG
TTGATTGTATTTATTCTCAAGATATTGCCTACATGAGAACGGGGATGTGT
GCGGGGGGGGGGGGGCCGTTCTGTTCCCTCCCCTTTTTCCTCCTTCTCCC
TTTTCTTTCTTTTCCTTCCTTCTTCCTCCTCCTCATTATCTTCTGCTCCT
TTATGATTCTATTTTCATCTCTCCTGTTTTGTACTTTTTTTCTTTTATTC
TTCATTTATTTTCTCTATCCTCTCTCTCAACATTCCCTACCCTTACTTCC
CTCTCCATCTACTGTCCTCCTTTTTTTTTTCTCATCCCACTATATCTATC
TTTTTGTCCCCAAATATATTTCTCTTTCCTCCCTCTTCCGTCCTCTATCA
TATTCCTGTCCTTATCCCGATTCTTCTCCATATCTATTACATTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_a18.g1 MSMg01no298_a18.g1 CHROMAT_FILE:
MSMg01no298_a18.g1 PHD_FILE: MSMg01no298_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:38 2005
         (354 letters)



>mm_chr9_33254076_33254829
          Length = 754

 Score =  646 bits (334), Expect = 0.0
 Identities = 346/350 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctgctgaatgaatgaatactgactcgccacaggacgaactgacagatgaatgaggg 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattctgccgaatgaatgaatactgactcgccacaggacgaactgacagatgaatgaggg 260

                                                                       
Query: 61  agagaatggagaaatgagtggattgcaagaacttcttgttttttaactaatacggaggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagaatggagaaatgagtggattgcaagaacttcttgttttttaactaatacggaggct 320

                                                                       
Query: 121 ttcaagttgttggaactgttagttcagttgaggttcagtcttctttgaagttatctcttt 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaagttgttggaactgttacttcagttgaggttcagtcttctttgaagttatctcttt 380

                                                                       
Query: 181 ttcaaggtagctaagattgtatggctggatattaatttcaggtgcgtggattacttacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaaggtagctaagattgtatggctggatattaatttcaggtgcgtggattacttacaa 440

                                                                       
Query: 241 aaagattaacccaaggctagtttttcctttttcgtacttccagtgttgattgtatttatt 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagattaacccaaggctaggttttcctttttcgtacttccagtgttgattgtatttatt 500

                                                             
Query: 301 ctcaagatattgcctacatgagaacggggatgtgtgcggggggggggggg 350
           ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 ctcaagatattgcctacatgagaacagggatgtgtgcggggggggggggg 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)