Query= MSMg01no298_d16.b1 MSMg01no298_d16.b1 CHROMAT_FILE:
MSMg01no298_d16.b1 PHD_FILE: MSMg01no298_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:52 2005
(662 letters)
>mm_chr9_35313250_35314311
Length = 1062
Score = 1050 bits (543), Expect = 0.0
Identities = 549/551 (99%)
Strand = Plus / Minus
Query: 112 ttttcctatatcctcttgattcctggggaagtgacacttactaggaccatttctggtgac 171
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 ttttcctatgtcctcttgattcctggggaagtgacacttactaggaccatttctggtgac 1003
Query: 172 tgtgcagggcacaaaagttcacagaaactcacaataaggagaactcaaactcctaaatat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 tgtgcagggcacaaaagttcacagaaactcacaataaggagaactcaaactcctaaatat 943
Query: 232 aaaggcaattatatagatttatatttatatttatatatctcaatatataaagccattttt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 aaaggcaattatatagatttatatttatatttatatatctcaatatataaagccattttt 883
Query: 292 ataaataaaatacaataaaagggttaacacttaaaacagcgttactaatcataaataaag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 ataaataaaatacaataaaagggttaacacttaaaacagcgttactaatcataaataaag 823
Query: 352 cagtccacaatgagattgccctaaaggtaaaggaatttcatcttcctcatgggcaagccc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 cagtccacaatgagattgccctaaaggtaaaggaatttcatcttcctcatgggcaagccc 763
Query: 412 catgtcaaattcaatctttaaaagcagttctgacctaaggctcgagccagcatacctgtt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 catgtcaaattcaatctttaaaagcagttctgacctaaggctcgagccagcatacctgtt 703
Query: 472 tcatgagttacagtgaacaactgactgcccacagacatttgcttcccgctttccaaaacc 531
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 702 tcatgagttacagtgaacaactgactgcccacagacatttgtttcccgctttccaaaacc 643
Query: 532 ccgactctgagacaactttgtttcaactcaactggcaaagcacacagtaggtctctacac 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ccgactctgagacaactttgtttcaactcaactggcaaagcacacagtaggtctctacac 583
Query: 592 cgtactttgcaagtcaagatgtaaggctacaaactacctccaaaactaactgcatatctc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cgtactttgcaagtcaagatgtaaggctacaaactacctccaaaactaactgcatatctc 523
Query: 652 ttatactatgg 662
|||||||||||
Sbjct: 522 ttatactatgg 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_d16.g1 MSMg01no298_d16.g1 CHROMAT_FILE:
MSMg01no298_d16.g1 PHD_FILE: MSMg01no298_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:52 2005
(554 letters)
>mm_chr9_35137317_35138272
Length = 956
Score = 843 bits (436), Expect = 0.0
Identities = 507/554 (91%), Gaps = 38/554 (6%)
Strand = Plus / Plus
Query: 1 aattcactgtgtgaacctgaagttggcagggccgatctcaggtacttgctagcagcctga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 aattcactgtgtgaacctgaagttggcagggccgatctcaggtacttgctaggagcctga 260
Query: 61 acaagttccagtagcttcctgggtgagctgcctcagaaaggagcggaatcagctttgaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaagttccagtagcttcctgggtgagctgcctcagaaaggagcggaatcagctttgaac 320
Query: 121 tgagcacacaggcagatggccagttagtgctgtacccttggagtgactgcgacacccact 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tgagcacacaggcagatggccagttagtgctgtacccttggagtgactgccacacccact 380
Query: 181 ctcagccatcaggctgtgcgctacaccagacatcctgctttagcttatggtctggtgggg 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ctcagccatcaggctgtgcgctacaccagacatcctgctttagcttacggtctggtgggg 440
Query: 241 cagggtgggctggatgaggatttgagttggaatgcttaagaggtccaagagagggtagcc 300
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagggtgggcaggaggaggatttgagttggaatgcttaagaggtccaagagagggtagcc 500
Query: 301 tggcctctgaagagtgaaaaacaagtggccctggagtga--tcttggtggctggccaagg 358
|||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 501 tggcctctgaagggtgaaaaacccgtggccctggagtgagatcttggtggctggccaagg 560
Query: 359 cacctttaattactgacaggtgccttgggagggggctaggacccctccatggaatgccca 418
|||||||||||||||||||||||| |
Sbjct: 561 cacctttaattactgacaggtgcc-----------------------------------a 585
Query: 419 tggaacggcagctcaaagctccctggatcacaagtcactgtcaaaagatggaaatgttca 478
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 586 tggaacggcagctcaaagctccctggatcacaagtca-tgtcaaaagatggaaatgttca 644
Query: 479 agatggactctcagtgcgcagaagcactggccctatctcagtatgaaccttgtttgcttt 538
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 645 agatggactctcagtgcgcagaagcactggccctatctcagtataaaccttgtttgcttt 704
Query: 539 tggccattgttgta 552
||||||||||||||
Sbjct: 705 tggccattgttgta 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 956
Length adjustment: 10
Effective length of query: 544
Effective length of database: 946
Effective search space: 514624
Effective search space used: 514624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
